Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0981 ATGCATCACCTGCACCTGCTTTCTTCCTCATTCACCATCCAAAACCCTAGATTATGCCCTAATCACTCCCTTTCCTCGCTCCACTCCTCCTCACCCTTGAGCTTCACTTCACGAACTCCTCTTCTGCTTTCCACAACCAGGCACTTCCGTAAAAAGCGCTCATTGCAATGTCGCCAGTCGGATTACTTTCAACAGCAGAACATCACTCGCAGACAACCTCCAAATGACTCTTCTTTTGGAGGAGCTTTGCAGCCTAGGGTTTTTGTTGGTCATTCGATATACAAAGGGAAAGCTGCTCTTACGGTAGAGCCCAAAGCCCCGGAGTTTACGCCTTTAGATTCAGGGGCATTTAAAGTGTCCAAAGAAGGTTTTGTGCTGCTCCAGTTTGCTCCTGCTGCAGGTGTTCGACAATATGATTGGGGCAGAAAGCAGGTGTTCTCATTATCTGTGACTGAAATTGGAAGTCTTATTAGCCTTGGTGCAAGAGAGTCATGCGAATTTTTTCATGATCCTTTTAAAGGAAGAAGTGAGGAAGGTAAGGTCCGGAAGGTGTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAGCCAGATGATACAAGTCGTGTGAATAATGCTAATCCGAGATCTGGGGACTTTGAATGGAGCAGATAG 807 0.4548 MHHLHLLSSSFTIQNPRLCPNHSLSSLHSSSPLSFTSRTPLLLSTTRHFRKKRSLQCRQSDYFQQQNITRRQPPNDSSFGGALQPRVFVGHSIYKGKAALTVEPKAPEFTPLDSGAFKVSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEIGSLISLGARESCEFFHDPFKGRSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNMDENIYIPVTRAEFAVLISAFNFIVPYLLGWHAYANSIKPDDTSRVNNANPRSGDFEWSR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0981 268 Gene3D Transcriptional Coactivator Pc4; Chain A 79 251 IPR009044 GO:0003677|GO:0006355
Vvi1g0981 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 44 268 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi1g0981 268 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 79 253 - -
Vvi1g0981 268 Pfam Whirly transcription factor 93 227 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi1g0981 268 SUPERFAMILY ssDNA-binding transcriptional regulator domain 85 263 IPR009044 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0981 13 268 Whirly Transcription Factor Family AT1G14410 65.517 1.23e-119 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vvi1g0981 Whirly 1.1e-61 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0981 - - vvi:100253653 513.457