Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0980 ATGCTGCCTCAATGGAGTCACAAAAACGTCCGCTTCTTGATTTTTCTCCACTCAAAGCGAAAGATAGACTTCACTCCCCGCATCATTTCTTCTTCCATCAACGATGATTCAGTTCCCAAACAACCCCAGTTGGGTTATGATCCTTCGGTGGAGCTCTTCGGACTGGAGGTTGATCTACAACCCAGGAATGTTACATCTGATGCTCCCAAAATAAGGTCGTGGTTTGGTCCCAATGGCCAGTATATCAGAGAGCTACCTTGCCCAAGTTGCAGGGGAAGGGGATATACACCATGCACTGAGTGTGGAATAGAAAGATCTAGATTAGATTGTTCACAATGTAATGGAAAGGGTATGCAGACTTGTCGTAAGTGCTTTGGGGATTGTGTCATATGGGAAGAGTCTATTGATGAACGACCATGGGAGAAAGCCCGCTCTGTCTCCCCACTCAAAGTGAAGGAAGATGATGAGGTAGACAACTTAGACATAAAGCTGGATGTGAGGAGAAAGTCAAAGCGTGTATACCAATCTCCATCTCCTGAAGTTGGGTTAAAGATCAGTCGATCACTAAAAAGTCTCAATGCCAAAACTGGTCTTTTTAGTAAGAGAATGAAGATCATTCATCGTGATCCAAAGCTTCATGCGCAAAGAGTGGCTGCAATTAAGAAAGCCAAAGGTACTGCTGCAGCAAGAAAGCGTGCTTCTGAAGCTTTGAAAGCTTTCTTCCGTGACCCAGAGAACCGTCGTAAGAGAAGCATTGCCATGAAAGGTGCCAAATTTTACTGTAAAAACTGCGGACGTGAAGGTCATAGGAGACACTACTGTCCTGAACTCGCCAATAGTTCAGTGGATAGGCGGTTCAGATGTCGGTTATGTGGGGAAAAGGGCCATAATAGAAGAACCTGTCGGAGGTCAAGAGAAAGTGGTACCAGAAGCACGGTTTCAAGGCATCACCATTGTAGGATATGTGGTCATAGCGGCCATAACCGCAGGACATGCCCTCAAGGTACTGGGTTAAAATTAGATGCCGGTGGTACAAACAGAGGTTCTCTAATTTCTGGAAGTAGGATATATGCCTGCAGGTTGTGCCTAGAAAAAGGACACAATATCAGGACATGTCCTAGCAAAAATAAATAG 1134 0.4497 MLPQWSHKNVRFLIFLHSKRKIDFTPRIISSSINDDSVPKQPQLGYDPSVELFGLEVDLQPRNVTSDAPKIRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRLDCSQCNGKGMQTCRKCFGDCVIWEESIDERPWEKARSVSPLKVKEDDEVDNLDIKLDVRRKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPKLHAQRVAAIKKAKGTAAARKRASEALKAFFRDPENRRKRSIAMKGAKFYCKNCGREGHRRHYCPELANSSVDRRFRCRLCGEKGHNRRTCRRSRESGTRSTVSRHHHCRICGHSGHNRRTCPQGTGLKLDAGGTNRGSLISGSRIYACRLCLEKGHNIRTCPSKNK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0980 377 SMART c2hcfinal6 318 334 IPR001878 GO:0003676|GO:0008270
Vvi1g0980 377 SMART c2hcfinal6 358 374 IPR001878 GO:0003676|GO:0008270
Vvi1g0980 377 SMART c2hcfinal6 260 276 IPR001878 GO:0003676|GO:0008270
Vvi1g0980 377 SMART c2hcfinal6 287 303 IPR001878 GO:0003676|GO:0008270
Vvi1g0980 377 Gene3D - 315 377 - -
Vvi1g0980 377 Gene3D - 258 314 - -
Vvi1g0980 377 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 43 307 - -
Vvi1g0980 377 ProSiteProfiles Zinc finger CCHC-type profile. 319 334 IPR001878 GO:0003676|GO:0008270
Vvi1g0980 377 ProSiteProfiles Zinc finger CCHC-type profile. 287 303 IPR001878 GO:0003676|GO:0008270
Vvi1g0980 377 ProSiteProfiles Zinc finger CCHC-type profile. 261 276 IPR001878 GO:0003676|GO:0008270
Vvi1g0980 377 SUPERFAMILY Retrovirus zinc finger-like domains 256 304 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0980 3 375 C2H2 Transcription Factor Family AT5G20220 65.974 2.41e-177 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0980 - - vvi:100258796 781.171