Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0978 ATGGAGATGACTACAGTGAAATCTGAATTAGGCCTGGAAAGGGGCCGCTTGTGCACTGCAGAAACTGATGCTTTGGAGGTGACCAAGTGTGTTAAGAGAAGGAGAAGAGATCCATCAGCAGTTACACCCGGATGCAGTAAACAAGGAGAGCAGCAGAAGCAGGTGTTGCTGCAGGCTGGGCAATCCATTACTGCCATTGCCACTACTATGAAGAGAAGTTCAAGATTCAGGGGTGTTAGCAGACATAGATGGACAGGGAGGTTTGAGGCTCATTTATGGGATAAAGGGTCCTGGAATGTGACACAGAGAAAAAAGGGAAAGCAAGGAGCTTATGATGAAGAAGAATCTGCTGCAAGAGCGTATGACTTGGCCGCACTGAAGTATTGGGGGCCATCAACTTTTACCAATTTCCCAGTATCAGATTATGAGAAGGAGATTGAAATAATGCAGGGTCTAACAAAGGAGGAATACTTGGCTTCTTTAAGAAGGAGAAGCAGTGGTTTTTCAAGAGGAGTGTCCAAGTACAGAGGAGTTGCAAGGCATCATCACAACGGAAGATGGGAAGCAAGGATTGGGAGGGTGTTTGGAAACAAGTATCTCTACCTTGGAACTTACAGTACCCAAGAAGAGGCTGCTCATGCTTATGACATTGCAGCAATTGAGTACAGAGGGATCAATGCTGTAACAAACTTCGAGTTGAGCACATACGTAAGGTGGCTGAGGCCCAGAGCCACTGCTCTTACCCCTCAGGAACCAAGATCAAATTCAATAATGCAAGCATCCTCTAACTGCCTTCCAAATGAGGAAGTAGAGCTGTCCTTCCTCAGCCCCAATCCTTTTACAGTAGATGACTTGGCAACTCCTCTAAAGCAAGAAAAGTTCCAAAGAGAGGTTTCCATCAGCCCTTGCACCAAGTCATCTTCGCCAACTGCACTAAGTCTCCTCCATAGATCTTCAGTATTTAGACAACTGGTGGAGAAGAATTCGAACAGCATCGAATAA 1002 0.4571 MEMTTVKSELGLERGRLCTAETDALEVTKCVKRRRRDPSAVTPGCSKQGEQQKQVLLQAGQSITAIATTMKRSSRFRGVSRHRWTGRFEAHLWDKGSWNVTQRKKGKQGAYDEEESAARAYDLAALKYWGPSTFTNFPVSDYEKEIEIMQGLTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAAHAYDIAAIEYRGINAVTNFELSTYVRWLRPRATALTPQEPRSNSIMQASSNCLPNEEVELSFLSPNPFTVDDLATPLKQEKFQREVSISPCTKSSSPTALSLLHRSSVFRQLVEKNSNSIE* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0978 333 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Vvi1g0978 333 SMART rav1_2 75 144 IPR001471 GO:0003700|GO:0006355
Vvi1g0978 333 SUPERFAMILY DNA-binding domain 74 140 IPR016177 GO:0003677
Vvi1g0978 333 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Vvi1g0978 333 ProSiteProfiles AP2/ERF domain profile. 75 138 IPR001471 GO:0003700|GO:0006355
Vvi1g0978 333 FunFam AP2-like ethylene-responsive transcription factor 173 234 - -
Vvi1g0978 333 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Vvi1g0978 333 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Vvi1g0978 333 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Vvi1g0978 333 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 256 - -
Vvi1g0978 333 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Vvi1g0978 333 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Vvi1g0978 333 Pfam AP2 domain 74 130 IPR001471 GO:0003700|GO:0006355
Vvi1g0978 333 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Vvi1g0978 333 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vvi1g0978 333 PRINTS Ethylene responsive element binding protein signature 214 234 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0978 Vvi-Chr1 10860182 10861942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0978 71 236 AP2-EREBP Transcription Factor Family AT5G57390 68.047 4.62e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi1g0978 AP2 9.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0978 - - vvi:100251939 655.21