Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g0977 | ATGGCAGCACCTAAATCCAATTCATTGCTTCTCCTGTTTGTGGTGATGTTCATGGTGGTAGTCCCAACAATACGAGCCCACATTGCGGAATACGATGACTACTGGAAAGCGCGGGAAAAGGAAGCCAAGACAGTTGCAATCGACGCATTTGATCCCAGCCCAGAGGATGTCAATGACGATTTCAACAAGAATGTTGAGAAATCGATATTCGGAAAGAATGGCACGAGAAGGAACCTGAAAGTAAACAAGGGCCCATGCAAGGCCACAAACCCCATTGATCGATGCTGGAGATGCCGTCGCAACTGGGCGATGGATCGCAGGAGGCTAGCCGACTGCGTCCTTGGTTTTGGGCGGAGAACAGTGGGAGGAAAGCACGGGAGGTTATACATTGTGACTGATCCGTCCGACAATGACATGCTTAATCCTAAGCCTGGAACCTTACGCTACGCCGTCATCCAGCCACAGCCACTGTGGATCGTGTTTGGGCGCAGTATGATAATTAAGCTGAAACAGGAGCTGATGGTGACCAGTGACAAAACCATTGACGGAAGGGGAGTCAATGTCCACATCGCATATGGTGCCGGCATTACGATTCAGTTCGCCAGGAATGTGATCATCCATGGCCTCCACATTCACGACATTGTTTCACGCCCAGGAGGACTTATTAGGGATTCTGTCCATCACTTCGGCTTGAGAACCAGGAGCGATGGCGATGGAATCTCCATCTTTGGCTCATCCCACGTTTGGATTGACCATAACTCCATGTCCAAGTGCGAGGACGGCCTGGTCGATGCCATCCAAGGATCCACCGCTATCACCATCTCCAACAACCATTTTACCAAGCACAATGAGACGATGTTGTTAGGCGCAAGTGATGGGTACTCGGGCGATATCATAATGCAAGTGACCGTGGCATTCAACCATTTCGGGAGGGGATTGATTCAAAGGATGCCAAGGTGCCGATGGGGGTTTTTCCATGTTGTGAACAACGACTACACCCACTGGAACATGTACGCTGTGGGTGGTAGTGCACATCCTACCATAGTCAGCCAGGGCAACCGATACGTCGCTGCCCCCTTAATGGATCCAAAGCATGACGCTAAGGAGGTGACCAAGAGAGACCATGCGACGAAAGCAGAGTGGAGCAAGTGGACATGGAGATCAGAGGGAGATCTGATGGTAAATGGAGCCTTCTTTGTTCAATCGGGGGTGCCTTTTAAGAAAAAGCCTTTCTCCAGATATGATATGATCAAAGCAAAGCCAGGCAAATTTGTGCCCAGACTCACTCGCTACTCAGGCGCCCTTACTTGCTGGCGTACCTCACCCTGTTAA | 1332 | 0.5045 | MAAPKSNSLLLLFVVMFMVVVPTIRAHIAEYDDYWKAREKEAKTVAIDAFDPSPEDVNDDFNKNVEKSIFGKNGTRRNLKVNKGPCKATNPIDRCWRCRRNWAMDRRRLADCVLGFGRRTVGGKHGRLYIVTDPSDNDMLNPKPGTLRYAVIQPQPLWIVFGRSMIIKLKQELMVTSDKTIDGRGVNVHIAYGAGITIQFARNVIIHGLHIHDIVSRPGGLIRDSVHHFGLRTRSDGDGISIFGSSHVWIDHNSMSKCEDGLVDAIQGSTAITISNNHFTKHNETMLLGASDGYSGDIIMQVTVAFNHFGRGLIQRMPRCRWGFFHVVNNDYTHWNMYAVGGSAHPTIVSQGNRYVAAPLMDPKHDAKEVTKRDHATKAEWSKWTWRSEGDLMVNGAFFVQSGVPFKKKPFSRYDMIKAKPGKFVPRLTRYSGALTCWRTSPC* | 444 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g0977 | 443 | SUPERFAMILY | Pectin lyase-like | 90 | 434 | IPR011050 | - | |
Vvi1g0977 | 443 | PRINTS | Pollen allergen Amb family signature | 384 | 408 | IPR018082 | - | |
Vvi1g0977 | 443 | PRINTS | Pollen allergen Amb family signature | 316 | 335 | IPR018082 | - | |
Vvi1g0977 | 443 | PRINTS | Pollen allergen Amb family signature | 414 | 437 | IPR018082 | - | |
Vvi1g0977 | 443 | PRINTS | Pollen allergen Amb family signature | 338 | 357 | IPR018082 | - | |
Vvi1g0977 | 443 | PRINTS | Pollen allergen Amb family signature | 112 | 129 | IPR018082 | - | |
Vvi1g0977 | 443 | PRINTS | Pollen allergen Amb family signature | 172 | 188 | IPR018082 | - | |
Vvi1g0977 | 443 | PRINTS | Pollen allergen Amb family signature | 136 | 161 | IPR018082 | - | |
Vvi1g0977 | 443 | PRINTS | Pollen allergen Amb family signature | 236 | 257 | IPR018082 | - | |
Vvi1g0977 | 443 | Pfam | Pectate lyase | 170 | 354 | IPR002022 | - | |
Vvi1g0977 | 443 | SMART | amb_all | 164 | 361 | IPR002022 | - | |
Vvi1g0977 | 443 | PANTHER | PECTATE LYASE 18-RELATED | 44 | 439 | IPR045032 | GO:0030570 | |
Vvi1g0977 | 443 | Gene3D | - | 89 | 436 | IPR012334 | - | |
Vvi1g0977 | 443 | Pfam | Pectate lyase, N terminus | 27 | 79 | IPR007524 | GO:0030570 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi1g0977 | Vvi-Chr1 | 10846297 | 10847955 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi1g0977 | 11 | 443 | Polysaccharide Lyase | AT3G01270 | 54.255 | 0.0 | 521 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g0977 | K01728 | - | vvi:100257069 | 913.679 |