Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0971 ATGGGATTGGGTGGTAATGATGTGAAAGTGGAGTCTTGGGAAGTTGGCAAATCCAAGGGAAGGAAGAAGAAAGATGGTGGGGAAGAGGAGACTGGGTGTTGTTGGGTTAAGCTCAGGTTTATGGCCAGCTGCATTTCTTCAAGATCTAAAGTTGATAGCTCCATTAGTGGAACCAGTACTCATTATGAAAATAGATCTACAAATGATACAAGCAGAGACCAACCGGTTGCTCCAGTAGTCTCATCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAAACTTGAAGAGGAACTTAAAGTTGCTTCTCGGCTTAGAAAATTCTCATTTAATGATCTTAAGATGGCAACACGGAATTTTAGACCCGAGTCTCTTCTTGGTGAAGGTGGTTTTGGCTGTGTATTTAAGGGGTGGATTGAAGAGAATGGAACTGCTCCAGTGAAGCCTGGCACAGGGCTTACTGTTGCTGTTAAAACGCTCAATCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAAGTGAATTTCCTTGGTGACCTCATTCATCCTAATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAGGGCCCTGCCTCTTCCATGGGCCATAAGGATGAAAATTGCACTAGGTGCTGCTAAGGGTCTTGCATTTCTTCATGAGGAAGCAGAAAGGCCAGTTATATATCGTGATTTTAAGACCTCCAACATCCTATTGGATGCAGAGTACAATGCCAAACTTTCTGATTTTGGACTTGCTAAAGATGGTCCCGAGGGAGATAAGACTCATGTATCTACCCGTGTTATGGGAACTTATGGATATGCTGCCCCTGAATATGTGATGACAGGACATTTGACATCAAGGAGTGATGTCTATAGTTTTGGTGTGGTTCTACTAGAAATGCTGACTGGCAGAAGATCCATGGACAAAAACCGGCCAAATGGGGAACATAACCTTGTGGAATGGGCAAGACCCCATCTAGGAGAAAGAAGAAGATTTTACCGTCTGATAGACCCACGGCTTGAGGGTCATTTTTCAATAAAAGGTGCCCAGAAAGCTGCCCAGCTGGCTGCTCACTGCCTCAGCCGGGACCCAAAAGTGAGGCCCTTAATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTGCCAAACCTTAAGGACATGGCGAGTTCATCTTATTATTTCCAAACCATGCAAGCTGAGCGCATTGGTTCCAGCCCAAATGCTCGAAATGGTGTCCGAACACAGCAAGGAATACTTTCAAGGAATGGCCATCAGCAGCAGAGGAGTCTTTCAATACCAAATGGTTCTCATGCTTCCCCGTATCACCAGAACCAATACCCCTATCAATCACCCAAACCCAATGGTAAACCGTAG 1446 0.4467 MGLGGNDVKVESWEVGKSKGRKKKDGGEEETGCCWVKLRFMASCISSRSKVDSSISGTSTHYENRSTNDTSRDQPVAPVVSSTTTSNAESNSSTSKLEEELKVASRLRKFSFNDLKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRALPLPWAIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQAERIGSSPNARNGVRTQQGILSRNGHQQQRSLSIPNGSHASPYHQNQYPYQSPKPNGKP* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0971 481 ProSiteProfiles Protein kinase domain profile. 122 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0971 481 MobiDBLite consensus disorder prediction 445 475 - -
Vvi1g0971 481 Pfam Protein tyrosine and serine/threonine kinase 126 402 IPR001245 GO:0004672|GO:0006468
Vvi1g0971 481 MobiDBLite consensus disorder prediction 1 28 - -
Vvi1g0971 481 MobiDBLite consensus disorder prediction 12 28 - -
Vvi1g0971 481 MobiDBLite consensus disorder prediction 51 94 - -
Vvi1g0971 481 CDD STKc_IRAK 128 405 - -
Vvi1g0971 481 FunFam Serine/threonine-protein kinase BIK1 89 207 - -
Vvi1g0971 481 Gene3D Phosphorylase Kinase; domain 1 81 207 - -
Vvi1g0971 481 MobiDBLite consensus disorder prediction 445 481 - -
Vvi1g0971 481 SUPERFAMILY Protein kinase-like (PK-like) 100 402 IPR011009 -
Vvi1g0971 481 MobiDBLite consensus disorder prediction 51 98 - -
Vvi1g0971 481 FunFam Probable serine/threonine-protein kinase PBL8 208 423 - -
Vvi1g0971 481 Gene3D Transferase(Phosphotransferase) domain 1 208 423 - -
Vvi1g0971 481 PANTHER OS01G0588500 PROTEIN-RELATED 86 405 - -
Vvi1g0971 481 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Vvi1g0971 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0971 Vvi-Chr1 10770041 10781195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0971 69 402 Glycoside Hydrolase AT3G07070 54.438 2.77e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi1g0971 PK_Tyr_Ser-Thr 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0971 - - vvi:100263771 941.414