Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0969 ATGGAATCACAATTGGCTCTGATTGAACAGTCTTTTAATTACCGGTACTCGGTTTGGGTGCGAGAAGCGCTCGATGAATTGCCTGATAATTTCACTATCACTGATCCTTCAATTTCAGGGCACCCAATTGTTTTTGCCAGCCGGGGATTCTTGAAAATGTCGGGATATTCGAAAGAGGAGGTGATTGGGAAGAATGGTAGGGCATTTCAGGGACCAGGGACTAGTAGGAGATCGATAACCGAAATTCAGGAGGCAATTCAAGAAGAGAGGACAATTCAAACTATTTTATTGAATTATCGTAAAGATGGAACCCCCATTTGGATGTTATTTCACATGAGTCCTGTTTTTAGTAAGGAAGATGGCAGGGTGATACACTTTGTTGCAGTTCAAGTGCCAATGTCAAGGAAGCCAAGGTGGTCCGGAAGCGGGCCTGGAAGAGATGGAGTATGCGAGGACGGGTGTAGGTCACGTGATATTGTATTCGGGTCTTGTAGGAGGGAGGTGTGCTCGGATTCAGTGTTGGAGCTGGAGCATGTTTTGGCTTTCGAGTCGCTGTTTGATTCAGATAACAGAGACGATGAAGAGCCTCGGGAAGCAAGTGATCAAGAGAAGAGAAGGGCTGCAGCCGCTGTTAACAATATCTTGTCTTTGCTAACACACTATAGTGAGTTAACTGGCAAATTGGTCTGCGAAAAGAGATGCACCTTATCTGGAATTGGCCTCCTTGGTGCTTCCTTAATTATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTGACTGATCCCCATTTACCTGAGATGCCAATCGTTTATGCAAGTGATGCCTTCTTAAAATTGACAGGATATGCTAGACATGAAGTGTTGGGATGCCAGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGAAGGATAG 966 0.4431 MESQLALIEQSFNYRYSVWVREALDELPDNFTITDPSISGHPIVFASRGFLKMSGYSKEEVIGKNGRAFQGPGTSRRSITEIQEAIQEERTIQTILLNYRKDGTPIWMLFHMSPVFSKEDGRVIHFVAVQVPMSRKPRWSGSGPGRDGVCEDGCRSRDIVFGSCRREVCSDSVLELEHVLAFESLFDSDNRDDEEPREASDQEKRRAAAAVNNILSLLTHYSELTGKLVCEKRCTLSGIGLLGASLIISLGRIKQSFVLTDPHLPEMPIVYASDAFLKLTGYARHEVLGCQCMFLSGVDTDPSTLLQVKESIQTEQACTEG* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0969 321 Pfam PAS domain 256 311 IPR000014 -
Vvi1g0969 321 Pfam PAS domain 41 131 IPR000014 -
Vvi1g0969 321 FunFam Protein TWIN LOV 1 isoform D 30 220 - -
Vvi1g0969 321 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Vvi1g0969 321 ProSiteProfiles PAS repeat profile. 269 289 IPR000014 -
Vvi1g0969 321 PANTHER PROTEIN TWIN LOV 1 1 320 - -
Vvi1g0969 321 Gene3D PAS domain 19 138 - -
Vvi1g0969 321 NCBIfam PAS domain S-box protein 23 127 IPR000014 -
Vvi1g0969 321 SUPERFAMILY PYP-like sensor domain (PAS domain) 257 317 IPR035965 -
Vvi1g0969 321 SMART pas_2 244 317 IPR000014 -
Vvi1g0969 321 SMART pas_2 18 87 IPR000014 -
Vvi1g0969 321 Gene3D PAS domain 256 321 - -
Vvi1g0969 321 ProSiteProfiles PAS repeat profile. 20 89 IPR000014 -
Vvi1g0969 321 SMART pac_2 93 136 IPR001610 -
Vvi1g0969 321 CDD PAS 27 133 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0969 Vvi-Chr1 10687766 10689991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0969 15 319 AGC Kinase Gene Family AT5G58140 28.235 3.03e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0969 - - vvi:100260420 627.091