Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0965 ATGGACGGTAGGAAACTGTATGGTGGCGGTTCAAACATGGCCGTTTTACTTCGTTCTAAATCCGTCGTAAACTTTGAAGGTGTTGGTGGAGACGACACAAAAGATAGGCCATTCTTCCAAACACTCCATGAGGAAGAAAATGGCGATGAGGATTTTGAGGGGTGCTTTCATCGACCCGAGAAGAAAAGGCGGCTCACAGCCGGTCAAGTTCAGTTTCTTGAGAGGAATTTTGAGGTGGAGAATAAGCTTGAACCAGAGAGGAAGAACCAGCTTGCAAAGGAGCTTGGGCTGCAGCCACGGCAGGTTGCAATATGGTTTCAAAACAGACGAGCCCGGTTCAAGACCAAACAGCTGGAGAAGGACTATGATTCTTTGAAAGCTAGCTATGATAGCCTCAAGGCTGACTATGATTGCATCCTGAAAGAGAAGGAAAAACTTAAAACTGAGCTCCTTTTGCTGACGGACAAAGCGCTGATCGGGGAGAAAGAAGGGGAGAAAACAAAAGCATTGGAGAACATCAGTCCATCACATGCAGAATCTCAGAAAGCAATTCCCAATAGAGTTTCTGAACATGTACCACCCAATGCACCAATCCTCTTCTGTAAACAGGAAGATGCAAGTTCAGCCAAAAGTGATGTTTTTGATTCGGACAGCCCACTCTACACTGATGGGAATCATTCTTCGCTGTTGGAGCCAGCAGATTCCTCTCAGATCTTTGAGCCAGATCAGTCGGAGTTCTCTCAAGACGAAGAAGATAACCTAAGCAAGAGCCTCATCCCTCCACTATGCTTCCCAAAGCTCGAAGACTGCTCTTACCCTGACCCACCTGCAAATGCTTGTAATCTTGGATTGCCGGCTGAAGAGCAGCCCTTTTGGTTCTGGTCTTACTGA 891 0.4669 MDGRKLYGGGSNMAVLLRSKSVVNFEGVGGDDTKDRPFFQTLHEEENGDEDFEGCFHRPEKKRRLTAGQVQFLERNFEVENKLEPERKNQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYDSLKASYDSLKADYDCILKEKEKLKTELLLLTDKALIGEKEGEKTKALENISPSHAESQKAIPNRVSEHVPPNAPILFCKQEDASSAKSDVFDSDSPLYTDGNHSSLLEPADSSQIFEPDQSEFSQDEEDNLSKSLIPPLCFPKLEDCSYPDPPANACNLGLPAEEQPFWFWSY* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0965 296 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Vvi1g0965 296 SMART HOX_1 59 120 IPR001356 GO:0003677
Vvi1g0965 296 Gene3D - 55 123 - -
Vvi1g0965 296 Pfam Homeobox associated leucine zipper 116 156 IPR003106 GO:0006355|GO:0043565
Vvi1g0965 296 SUPERFAMILY Homeodomain-like 51 118 IPR009057 -
Vvi1g0965 296 Coils Coil 115 149 - -
Vvi1g0965 296 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Vvi1g0965 296 MobiDBLite consensus disorder prediction 169 191 - -
Vvi1g0965 296 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Vvi1g0965 296 CDD homeodomain 61 117 IPR001356 GO:0003677
Vvi1g0965 296 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Vvi1g0965 296 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Vvi1g0965 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 47 217 IPR045224 GO:0003700
Vvi1g0965 296 FunFam homeobox-leucine zipper protein ATHB-6-like 64 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0965 Vvi-Chr1 10605291 10607512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0965 6 223 Homeobox Transcription Factor Family AT3G01470 43.578 8.03e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi1g0965 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0965 - K09338 vvi:100241577 576.63