Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0963 ATGAGCCGCAAGAGAGAGAAACCCTACCACTCTCGCCACGCTCTATCTTCTATCGCAAAACGACGTCGTCCTTCACTTCTCGAGTTACCTGACTCCGCCTCCCGCGATGCGCCCGCCACCAAGCACTCCTCCCCGGGGGCCGTGCTCGTTATCGGCCTCTCTCCAGAGTGTTCCGTCCTCGACCTGAAGTCCCGGTTCGAGATCTACGGCTGCATCTCCCGCATCCGCATCGACCGCGACGGAGTCGGCTACATCACCTTCCGCTCCAAGGACTCTGCCGACGCCGCCATCACCGCCTCTCAAGACCCTTCGTTCGGCATAACCATTGATTCCAAAAGAGTACAGGTATTATTGGCGAAAGATCCGAATTCAGCAGTAGGGTTTGGTTCAAACAAGGACAATGGGTCCTCATCGAAGCTTTTGCGGGCTGAGGTGCCTCTGAGCAGGCATGGAAGAAGTAATAAGCTTGTTTCAAGTAGTGCGAAGCCCAAGACAGATCCAATTGCAGGTTTAGATGTGGCTTTTAAAGGAAGAGAAATGGTTGCTTATGATGATATTCTGTAG 564 0.5355 MSRKREKPYHSRHALSSIAKRRRPSLLELPDSASRDAPATKHSSPGAVLVIGLSPECSVLDLKSRFEIYGCISRIRIDRDGVGYITFRSKDSADAAITASQDPSFGITIDSKRVQVLLAKDPNSAVGFGSNKDNGSSSKLLRAEVPLSRHGRSNKLVSSSAKPKTDPIAGLDVAFKGREMVAYDDIL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0963 187 Gene3D - 28 155 IPR012677 -
Vvi1g0963 187 PANTHER GEO13361P1-RELATED 33 146 - -
Vvi1g0963 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 99 IPR000504 GO:0003723
Vvi1g0963 187 MobiDBLite consensus disorder prediction 1 43 - -
Vvi1g0963 187 SUPERFAMILY RNA-binding domain, RBD 23 130 IPR035979 GO:0003676
Vvi1g0963 187 CDD RRM_SF 48 116 - -
Vvi1g0963 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 121 IPR000504 GO:0003723
Vvi1g0963 187 MobiDBLite consensus disorder prediction 1 19 - -
Vvi1g0963 187 SMART rrm1_1 47 117 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0963 1 187 Homeobox Transcription Factor Family AT1G27050 45.673 1.03e-53 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0963 - - vvi:100853274 365.54