Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0956 ATGGCCGCAGATTACTACAAGCTACTGAGAGTGAATCGGAACGCGAGTGCGGAAGAGTTGAAGAAGGCGTACAAAAGATTGGCCATCAAATGGCATCCAGACAAGAACCCTAATCATAACAGGGTTGAAGCTGAAGCCAAGTTCAAGCAGATCTCCGAAGCCTATGATGTTCTCAGTGATTCCCGGAAGCGTCAGATCTACGATCTCTATGGCTATCAATATGCCTCGTTCAATCACCGGGACGCTCGGGATGTTTTCGCCGAGTTGTTTGGTAGTGGTGGCAAGGCCATGGAGAAGAGGCTGGATTGTAGTTTGGAGGAGCTATACCAGGGTTCGAAAAGGGAAATCAAGATTTCCCGGACTGTCATTCGTGAATCTGGGAAGGCCAGGATTGTTGAGGAAACCCTGCTAATAACCATTGGACCAGGATGGAAGAAGGGCACAAAAATCACTTTCCCAATGAAAGGGAACCAAGAACCTGGCATGACCCCATCTGATCTCATCTTTGTGGTACATGAGAAGCCCCATGCGCTGTATGAGCGGGAAGGGAATGATCTGGTGGTCAAACAGAGTATATCATTACTGGATGCTCTCACAGGGAAGACTCTCATTCTGACAACCTTAGATGGAAGGAATCTCACAATCCCAGTGACAGACATTGTCCGCCCTGGCTATGTTATGGTGGTTCCAGATGAAGGGATGCCCATGTCCAAAGAACCCACGAAGAAAGGAAACCTCAAAATCAAGTTTGATGTCAAGTTTCCACCAAGGCTTACTGCACAACAGAAATATGAAGTGAAGAGGGTGCTGGTTGGGGGCTGA 822 0.4793 MAADYYKLLRVNRNASAEELKKAYKRLAIKWHPDKNPNHNRVEAEAKFKQISEAYDVLSDSRKRQIYDLYGYQYASFNHRDARDVFAELFGSGGKAMEKRLDCSLEELYQGSKREIKISRTVIRESGKARIVEETLLITIGPGWKKGTKITFPMKGNQEPGMTPSDLIFVVHEKPHALYEREGNDLVVKQSISLLDALTGKTLILTTLDGRNLTIPVTDIVRPGYVMVVPDEGMPMSKEPTKKGNLKIKFDVKFPPRLTAQQKYEVKRVLVGG* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0956 273 FunFam DNAJ heat shock family protein 175 270 - -
Vvi1g0956 273 Gene3D DnaJ domain 2 98 IPR036869 -
Vvi1g0956 273 SUPERFAMILY Chaperone J-domain 4 94 IPR036869 -
Vvi1g0956 273 Gene3D - 99 175 - -
Vvi1g0956 273 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vvi1g0956 273 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vvi1g0956 273 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vvi1g0956 273 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vvi1g0956 273 Pfam DnaJ domain 4 68 IPR001623 -
Vvi1g0956 273 SUPERFAMILY HSP40/DnaJ peptide-binding domain 99 176 IPR008971 GO:0006457|GO:0051082
Vvi1g0956 273 SMART dnaj_3 3 63 IPR001623 -
Vvi1g0956 273 SUPERFAMILY HSP40/DnaJ peptide-binding domain 179 263 IPR008971 GO:0006457|GO:0051082
Vvi1g0956 273 CDD DnaJ_C 97 258 - -
Vvi1g0956 273 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vvi1g0956 273 CDD DnaJ 4 60 IPR001623 -
Vvi1g0956 273 Pfam DnaJ C terminal domain 98 255 IPR002939 -
Vvi1g0956 273 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 270 - -
Vvi1g0956 273 ProSiteProfiles dnaJ domain profile. 4 71 IPR001623 -
Vvi1g0956 273 FunFam Dnaj homolog subfamily b member 94 174 - -
Vvi1g0956 273 Gene3D - 176 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0956 Vvi-Chr1 10418356 10419731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0956 5 79 C2H2 Transcription Factor Family AT1G74250 34.615 9.69e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0956 K09510 - vvi:100251972 547.354