Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0952 ATGACTACTGTAGCTGCCGCTCCTCCGTGCCTCCATCGCATTGCTTCCGCCGCTCTCTTCTTCTCGCTTCTCCTGCTCCTCTCCTTTGCTCCTGCACTTGAGGCATGTTCTTCACGCCCGGGGACTTCCGGATCTTCCTGTCCACCCTTCACTTCTACTCCTTCTTTCCCATTTTCTTCAACCCCAGGTTGTGGTCATCCCTCTTTCCAGATTAGGTGCTCTTTTCCCCACTCTATCATCTCCATTAACAATCTCTCATTTGCTCTCGTTCAGTACCAACCCAACTCATCCTCTCTCAATCTCGCTCCTCAACCCCTCATTCCAGCCACCGCTCATCGGAATTGCTCCTTGCCTCAGCTGCTCTCTATTCCCAATCGCTCCATCAACCTCTCCGGCTCCCCATTTCGAGTCTCCGACGCCTCCTGTTCTCGCCTCTCCCTTCTCCGTCCTTGCCCCCCTCCAAATCTGCCCAACTGCAGCCGTTGTTCTTGGGAATGTCGGCTCATCAAGAACCCACTTCAACTGCTACATGACTGTGGATCTACCCATGCTACGCTTTCAGAACAGGGTTGCCAACCAGACGTTTTGGGGTTTCTTGACAGGTTCCTGAAATGGGGGATCCAGGTCGACTGGGATGAAGATCAAGATGCCTACTTCACCAACTGCAAGGAATGCCAAGCCAAGAATGGAGTTTGTGGCTTCAATTCATCCGACCCCAGACAGCCCTTCATATGCTTTCACTTGAAAAATCAAATTTCGCCACCATGGATTCGTCAGGATAGCCCTAATCGAATCGCTATCTTGTGCTCTATCTTCGTGTTGACTTGTGTGTTTCTTGCCATTGCGGTAGCTACCGCTATCTTGCGTTCAAAAAAACTAAACTCAGCCGCGGAACAAGATCCAACCACTCTCTTCCTCCACCGCCACCGCTCCGCCAGTCTCCTTCCACCCGTATTCACGTACGAAGAGCTAGATACTTCAACCAACCGCTTCGACTCCAAGCGCAAAATCGGCGATGGTGGGTTCGGTTCTGTCTACTTGGGTCAGCTCTATGATGGCCGTATCGTCGCCGTTAAACACCTCCACCAACACCACCCAGCGGCCGCCGCTGGGCGAGCCTTCTCCACGAAATCCTTCTGCAACGAGATCTTGATACTGTCGTCAATTGATCACCCCAACCTAGTGAAGCTCCACGGCTACTGCAGCGACCCAAGAGGGCTTCTTCTCGTCTACGATTACGTCCCAAACGGGACACTCGCCGACCACCTCCATGGCCCAAAGAGCTTATACCGCAAAGCCTCGTTAACATGGCAAGTCAGAATTGATATAGCGTTACAAACAGCCATGGCCATCGAGTACCTCCATTTCTCGGTCGAACCAGCCATTGTTCACAGAGACATTACCTCATCAAACATCTTTGTAGAAAGAGACATGAGAATCAAAGTAGGAGATTTCGGACTGTCTAGGCTTCTGGTATTCCCAGAAGCGACGTCATCCTCTTCATCTGGGTACGTCTGGACTGGTCCTCAAGGCACTCCGGGCTACTTGGACCCAGACTACCACCGGTCCTTCCGCTTGACGGAGAAGAGCGATGTGTACAGCTTAGGAGTGGTGTTGCTGGAGCTGATATCTGGAATGAAGGCAGTGGACCACACCAGAGACAAGAGAGACATGACGTTGGCTGATCTGATGGTGTCCAAGATCCAGATGGGTCTGCTCCACCAGGTGGTGGACCCAATTCTATTGCTCGACGCAGACGCCATGAACGGTGTCGATGCAGTGGCGGAGCTTGCGTTCCGGTGCGTGCAGACGGAAAAGGACGACCGGCCGGATTCCAAGGAGGTGGTGGCAGAGCTGAAACGGATCAGGAATCGTACACGTATCCAACGTGGGTCCACTCAGGATGCAGATGAGAATGTTTAA 1923 0.5252 MTTVAAAPPCLHRIASAALFFSLLLLLSFAPALEACSSRPGTSGSSCPPFTSTPSFPFSSTPGCGHPSFQIRCSFPHSIISINNLSFALVQYQPNSSSLNLAPQPLIPATAHRNCSLPQLLSIPNRSINLSGSPFRVSDASCSRLSLLRPCPPPNLPNCSRCSWECRLIKNPLQLLHDCGSTHATLSEQGCQPDVLGFLDRFLKWGIQVDWDEDQDAYFTNCKECQAKNGVCGFNSSDPRQPFICFHLKNQISPPWIRQDSPNRIAILCSIFVLTCVFLAIAVATAILRSKKLNSAAEQDPTTLFLHRHRSASLLPPVFTYEELDTSTNRFDSKRKIGDGGFGSVYLGQLYDGRIVAVKHLHQHHPAAAAGRAFSTKSFCNEILILSSIDHPNLVKLHGYCSDPRGLLLVYDYVPNGTLADHLHGPKSLYRKASLTWQVRIDIALQTAMAIEYLHFSVEPAIVHRDITSSNIFVERDMRIKVGDFGLSRLLVFPEATSSSSSGYVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSLGVVLLELISGMKAVDHTRDKRDMTLADLMVSKIQMGLLHQVVDPILLLDADAMNGVDAVAELAFRCVQTEKDDRPDSKEVVAELKRIRNRTRIQRGSTQDADENV* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0952 640 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Vvi1g0952 640 FunFam Putative serine/threonine-protein kinase At1g18390 family 307 413 - -
Vvi1g0952 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 626 IPR044652 GO:0004672
Vvi1g0952 640 Pfam Protein kinase domain 332 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0952 640 Gene3D Phosphorylase Kinase; domain 1 307 413 - -
Vvi1g0952 640 ProSitePatterns Tyrosine protein kinases specific active-site signature. 462 474 IPR008266 GO:0004672|GO:0006468
Vvi1g0952 640 Gene3D Transferase(Phosphotransferase) domain 1 414 639 - -
Vvi1g0952 640 CDD STKc_IRAK 337 622 - -
Vvi1g0952 640 ProSiteProfiles Protein kinase domain profile. 331 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0952 640 SUPERFAMILY Protein kinase-like (PK-like) 312 619 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0952 Vvi-Chr1 10394374 10396296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0952 47 628 Receptor kinase-like Gene Family AT1G69910 65.609 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vvi1g0952 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0952 - - vvi:100241694 1216.83