Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0948 ATGGCTACGAGCGACGTGAAGCTATTGGGTGCGTGGCCAAGCCCATTCGCCTTGCGAGTCCACATCGCCCTTAACATCAAATCCATTGACTACGAGTGTCTCGAAGAGAACCTGCTAGCCAAGAGCCAGCTCCTCCTCCAATCCAACCCAGTACACAAGAAAGTCCCAGTTCTCATCCACCATGACAAACCCATATGCGAGTCCCTCGCCATTGTTCAGTACATCGACGAGGCTTGGTCCTCCGCTCCCTCCATCCTCCCCTCAGACCCTTACGACCGCGCTGTTGCCCGCTTCTGGGCTGCTTATATTGACGACAAGTGGTTTCCATGGCTGAATGGGGTAGCGAATGCTCAAGGAGCGGAGGCAAAAAAGGCGGCGTTGGATCAAGTACGTGAAGGGTTAGTGGTACTGGAGGAGGCGTTTGGGAAGTGCAGCAAAGGTAAGGATTTCTTCAGCGGGGATCGAATTGGATACGTTGATATTGCTCTAGGGTGCTTCTTGGGGTGGGTGTATGTGGCGGAGAAGAGGAACGACGTAAAGCTGCTTGTTGAAGACAAGATGCCTGGTCTGGCTGCATGGGCAAACAAGTTTTGTGAGGATGGTACTGTGAAGGATGTGATGCCAGACAAAGATGAGCTATTGGAGTTTGCTAACATGATCCTCGAAGCCAGGGCCAAACTCAATGCCTCTTCTAATAATTAA 702 0.5171 MATSDVKLLGAWPSPFALRVHIALNIKSIDYECLEENLLAKSQLLLQSNPVHKKVPVLIHHDKPICESLAIVQYIDEAWSSAPSILPSDPYDRAVARFWAAYIDDKWFPWLNGVANAQGAEAKKAALDQVREGLVVLEEAFGKCSKGKDFFSGDRIGYVDIALGCFLGWVYVAEKRNDVKLLVEDKMPGLAAWANKFCEDGTVKDVMPDKDELLEFANMILEARAKLNASSNN* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0948 233 FunFam Glutathione S-transferase GSTU6 1 86 - -
Vvi1g0948 233 SFLD Main (cytGST) 2 223 - -
Vvi1g0948 233 SFLD Main.3: Omega- and Tau-like 2 223 IPR045073 -
Vvi1g0948 233 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 227 IPR010987 -
Vvi1g0948 233 CDD GST_C_Tau 90 218 IPR045074 GO:0004364|GO:0006749
Vvi1g0948 233 SUPERFAMILY GST C-terminal domain-like 77 221 IPR036282 -
Vvi1g0948 233 Pfam Glutathione S-transferase, C-terminal domain 98 199 IPR004046 -
Vvi1g0948 233 FunFam Glutathione S-transferase U9 86 227 - -
Vvi1g0948 233 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 215 IPR045073 -
Vvi1g0948 233 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
Vvi1g0948 233 Gene3D - 86 228 - -
Vvi1g0948 233 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Vvi1g0948 233 CDD GST_N_Tau 6 79 - -
Vvi1g0948 233 Gene3D Glutaredoxin 2 85 - -
Vvi1g0948 233 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0948 Vvi-Chr1 10347285 10348110 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0948 1 221 Glutathione S-transferase Gene Family AT1G10370 61.261 9.91e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0948 K00799 - vvi:100267378 470.7