Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0927 ATGGATCCTCCCACGCTCATAAACCAAGGGGCGTCTTATCATTTGGCTGAGATCTGGAACTATCCGATCAGTGGTGGTGGCGCTGGGGAGGCTGGAGGTGGTTTGGAGCTGAGGGGAGGGCATCTTGGACAGAATTTGGGGCACTTTGGGGATAATGCTGGCGTAGGAGGTGCGAATCGTGAAGCTTCTGGTGGTGGTGATGATCCGATGGTTTTGGAGCGTAGTGGAGGGAGGAAGCGGCGTGATGCGGCGACAGAGGATGAGGGGGGGAAGGCCGTGTCAACCAGCGGTGGCGGCAATGTTGCGAATGATTGTGATGGTAAGCGTTTAAAAACTTCGGGATCCAGAGATGAGAACCGTGATTCCAAAACTGAGGTAGAAACCAGTTCAGGCAAGCCTGTGGAACAAAACCCTCAATCAGCTGACCCACCTAAGCAAGATTTTATTCATGTACGAGCAAGAAGGGGTCAAGCTACTGATAGCCACAGTCTAGCTGAAAGAGCTAGAAGAGAAAAGATCAGCGAGAGGATGAAAATTCTCCAGGACTTGGTCCCTGGTTGTAATAAGGTTATTGGCAAAGCGCTGGTCCTTGATGAGATTATTAATTACATCCAATCATTACAGCGTCAGGTTGAGTTCCTGTCAATGAAACTTGAGGCTGTCAATTCGAGAATGAACTCTGGCATTGAAGGATTTCCTTCAAAGGATTTTGGTCAGCAAACATTTGATGCTGCTGGTGTGGCATATAGTTCACAAGCAACAAGAGAATATGGCCGGGCCTCATCGCCAGAATGGTTGCATATGCAGGTTGGTGGTGGTTTTGACCGAACATAA 834 0.4904 MDPPTLINQGASYHLAEIWNYPISGGGAGEAGGGLELRGGHLGQNLGHFGDNAGVGGANREASGGGDDPMVLERSGGRKRRDAATEDEGGKAVSTSGGGNVANDCDGKRLKTSGSRDENRDSKTEVETSSGKPVEQNPQSADPPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNSGIEGFPSKDFGQQTFDAAGVAYSSQATREYGRASSPEWLHMQVGGGFDRT* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0927 277 MobiDBLite consensus disorder prediction 51 145 - -
Vvi1g0927 277 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
Vvi1g0927 277 MobiDBLite consensus disorder prediction 109 128 - -
Vvi1g0927 277 MobiDBLite consensus disorder prediction 129 143 - -
Vvi1g0927 277 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 82 248 IPR024097 GO:0006355
Vvi1g0927 277 Gene3D - 154 229 IPR036638 GO:0046983
Vvi1g0927 277 SMART finulus 163 213 IPR011598 GO:0046983
Vvi1g0927 277 FunFam Basic helix-loop-helix transcription factor 154 226 - -
Vvi1g0927 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Vvi1g0927 277 Coils Coil 204 224 - -
Vvi1g0927 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 225 IPR036638 GO:0046983
Vvi1g0927 277 MobiDBLite consensus disorder prediction 72 88 - -
Vvi1g0927 277 CDD bHLH_AtBPE_like 147 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0927 Vvi-Chr1 10146529 10149442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0927 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.667 7.31e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g0927 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0927 - - vvi:100265665 539.265