Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0925 ATGGCTTCACATGTAAATGAAGTTAATGCTGGTCTTGTTGCCATCAAAAGCATAGTCCAAGAGAAGCGAGTACTTATTATTTTAGACGATGTTGATGATGCAAGCCAACTCACGGCAATTGCTGGCAGGAAAAAATGGAGAAAATGGTTTTATGAAGGAAGTAGAATCATTATCACTACTAGAGATAGAGAGGTTCTGCATGAGCTTCATGAGAACGAGCTCTATGAGGTGAAACAGTTGAATTCCCCTGAGTCGCTACAACTTTTTAGTCACTATGCATTAGGGAGAGTGAAACCCACCCCAGACTACCTTCCTCTGTCCAAACAAATTGTATCTCTTACAGGAGGACTGCCCTTGGCTCTGGAAGTATTTGGTTCTTCTTTGTATGATAAGAGGAAAATAGAGGAATGGGAAGATGCTCTGCAAAAGTTAAAACAGATAAGGCCCATGGATCTTCAGGGTGTGTTAAAGATAAGTTATGACGGGCTGGATGAACAGGAGAAGTGTGTATTCCTTGATATTGCATGTTTGTTTATTAAAATGGGAATGAAGAAAGAAGATGCCATTGATATATTGAAGGGTTGTGGTTTCCGGGCTGAGATAGGAATAAAGGTACTTGTTGACAAATCTCTCCTTAAGATTGCAGAGGACTATACTTTGTGGATGCATGACCAGCTTAGAGACATGGGAAGACAAATCGTTCTGCATGAAAACCATGAAGATCTTGGAATGCGTAGCAGGCTGTGGGATCGCAGTGAGATTTTGCGTGTCTTGCAGAATAACTTGGGATCAAGATGTATTCAAGGTATGGTCCTAGATTTTGTGAGTGATATCTTTATGAAGGATTCTGCTGCTGCTTGGGGTCGCTTTAGAGGAACACCCAATTTCACCACAGCAGTTACATGGCTAAAGGAAACATATAAGGAATATTTTCAACATGCAGCAGAGAAAGAGAGGGAATTGATACTTCAAACTAAGTCATTTGAATCCATGATTAACCTAAGACTGCTTCAAATCGATAATGTACAATTAGAAGGAGAATTCAAACTCATGCCTGCAGAACTGAAGTGGCTACAATGGAGAGGATGCCCTTTGAAAACTCTTCCTTCTGATTTCTGTCCTCAAGGACTTAGGGTCCTAGATCTTTCCGAAAGCAAGAATATTGAGCGACTGTGGGGCGGCAGATGGTGGAGCTGGCACAATAACAAGGTGGGTGAGAACTTGATGGTCATGAATCTCCATGGTTGCTGTAATTTAACTGCCATTCCAGATTTATCTGGAAATCAAGCCTTGGAAAAGTTGATTCTTCAGCATTGCCATGGCCTAGTTAAGATTCATAAGTCGATCGGGGACATCATTAGTTTACTTCATTTGGACCTGAGCGAATGTAAGAACCTTGTTGAATTTCCAAGTGATGTCTCTGGGCTGAAAAATCTCCAGACCCTTATCCTCTCTGGTTGCTCCAAACTGAAGGAATTACCAGAGAACATAAGCTACATGAAATCTTTAAGAGAACTCCTTCTTGATGGAACTGTTATAGAGAAGCTACCTGAATCTGTACTCCGTCTCACAAGACTTGAAAGGCTTAGTCTAAATAATTGCCAGTCATTAAAGCAATTACCTACATGCATAGGCAAGCTGGAATCCCTTAGAGAACTTTCATTTAATGATTCTGCTTTAGAAGAAATACCTGATTCCTTCGGATCTTTGACAAACCTTGAGAGACTAAGTTTGATGAGGTGTCAATCCATCTATGCAATTCCTGATTCTGTCCGCAATCTCAAATTGTTGACAGAATTTTTAATGAATGGTAGCCCAGTCAATGAATTGCCCGCTTCTATCGGTTCATTATCCAACCTGAAGGACTTATCAGTTGGTCATTGTAGATTTCTGAGCAAATTGCCTGCTTCAATTGAAGGATTAGCTTCAATGGTTGTGCTTCAGTTGGATGGGACATCAATCATGGACCTACCAGATCAGATTGGTGGATTGAAAACACTTAGGAGGCTTGAGATGAGGTTCTGTAAACGTCTTGAATCATTGCCAGAAGCAATTGGAAGCATGGGGTCTCTTAATACTTTGATCATTGTGGATGCCCCCATGACTGAGTTGCCAGAATCCATAGGGAAGTTAGAAAATCTCATCATGCTAAATTTGAACAAGTGTAAACGGCTACGCAGATTGCCAGGTTCAATCGGGAATTTGAAGTCATTGCATCACTTGAAAATGGAGGAAACTGCTGTTAGGCAACTACCTGAAAGTTTTGGGATGCTCACAAGCTTAATGAGATTGTTAATGGCAAAGCGGCCTCATCTTGAGCTGCCCCAAGCCCTTGGACCAACAGAGACAAAAGTCCTTGGTGCAGAAGAGAATTCGGAGCTCATTGTACTTCCAACTTCTTTCTCAAATCTCTCCTTGTTGTATGAATTGGATGCTCGCGCTTGGAAAATATCTGGTAAAATTCCTGATGATTTTGATAAGCTGTCATCGTTGGAGATTTTGAATCTTGGTCGTAATAACTTCAGCAGTCTTCCGTCTAGTCTGAGGGGCCTTTCCATTCTCAGAAAGCTTCTTTTGCCCCATTGTGAAGAGCTCAAGGCTCTCCCTCCACTTCCCTCAAGTTTGATGGAGGTGAATGCTGCAAACTGTTATGCTTTGGAAGTTATATCTGATCTGTCAAACTTGGAGAGTTTACAAGAGCTGAATCTTACAAACTGTAAGAAATTAGTGGATATTCCAGGCGTTGAATGCTTGAAGTCATTGAAAGGTTTCTTTATGAGTGGTTGCAGTTCATGCTCTTCCACGGTAAAGAGAAGACTCAGTAAGGTTGCTTTGAAGAATTTGCGCACTTTAAGTATTCCTGGAAGCAATATCCCAGACTGGTTTTCTCGCAATGTTGCCATTTTCTCAAAGCGCAAAAACCTTGTAATCAAAGCTGTGATTATAGGAGTTGTGGTCTCTCTCAGCCATCACATACAGGACGAATTAAGAGATCAACTTCCCTCAGTCCCAGGCATCGAAGCGAAGATCCTTAGAATGAACAGACAGGTATTTGGCACCATGCTGGACTTAACAGGAGTACCAAAGACGGATGAAGATCATCTATACTTGTGTAGATATCGTGAGTTTCACCCCATAGTCTCTATGCTGAAAGATGGCGATAAGATACAGGTGACAATGAGAAATCCACCGATGGTTAAAGGGGTAGAGCTGAAGAAATCTGGGATTCATCTGATTTTCGAAAATGATGATGATTACGATGAAGATGAGAGATCATTTGATGAAAACCTACAAACTGTATCAGAAAAAATAGCAAGATTTTTTGGTCCTTCTGAAGGAGGTAATAGCATCTCTGACTCCATAGATGAGGTCGAACGAGAAAAGCAGGAAATGGGAATGAAAGAGGAATGGAAGGAAGAGAAGAAGGGCCGTGATGGTAGCCATAGAAGTTCATTTCTTCTTTTCTTCTTCATTGCCCTTCCTTCCTTCTTTCTGTTGTTGAGTTGGTCGTGGACACGCGGCTAG 3525 0.4139 MASHVNEVNAGLVAIKSIVQEKRVLIILDDVDDASQLTAIAGRKKWRKWFYEGSRIIITTRDREVLHELHENELYEVKQLNSPESLQLFSHYALGRVKPTPDYLPLSKQIVSLTGGLPLALEVFGSSLYDKRKIEEWEDALQKLKQIRPMDLQGVLKISYDGLDEQEKCVFLDIACLFIKMGMKKEDAIDILKGCGFRAEIGIKVLVDKSLLKIAEDYTLWMHDQLRDMGRQIVLHENHEDLGMRSRLWDRSEILRVLQNNLGSRCIQGMVLDFVSDIFMKDSAAAWGRFRGTPNFTTAVTWLKETYKEYFQHAAEKERELILQTKSFESMINLRLLQIDNVQLEGEFKLMPAELKWLQWRGCPLKTLPSDFCPQGLRVLDLSESKNIERLWGGRWWSWHNNKVGENLMVMNLHGCCNLTAIPDLSGNQALEKLILQHCHGLVKIHKSIGDIISLLHLDLSECKNLVEFPSDVSGLKNLQTLILSGCSKLKELPENISYMKSLRELLLDGTVIEKLPESVLRLTRLERLSLNNCQSLKQLPTCIGKLESLRELSFNDSALEEIPDSFGSLTNLERLSLMRCQSIYAIPDSVRNLKLLTEFLMNGSPVNELPASIGSLSNLKDLSVGHCRFLSKLPASIEGLASMVVLQLDGTSIMDLPDQIGGLKTLRRLEMRFCKRLESLPEAIGSMGSLNTLIIVDAPMTELPESIGKLENLIMLNLNKCKRLRRLPGSIGNLKSLHHLKMEETAVRQLPESFGMLTSLMRLLMAKRPHLELPQALGPTETKVLGAEENSELIVLPTSFSNLSLLYELDARAWKISGKIPDDFDKLSSLEILNLGRNNFSSLPSSLRGLSILRKLLLPHCEELKALPPLPSSLMEVNAANCYALEVISDLSNLESLQELNLTNCKKLVDIPGVECLKSLKGFFMSGCSSCSSTVKRRLSKVALKNLRTLSIPGSNIPDWFSRNVAIFSKRKNLVIKAVIIGVVVSLSHHIQDELRDQLPSVPGIEAKILRMNRQVFGTMLDLTGVPKTDEDHLYLCRYREFHPIVSMLKDGDKIQVTMRNPPMVKGVELKKSGIHLIFENDDDYDEDERSFDENLQTVSEKIARFFGPSEGGNSISDSIDEVEREKQEMGMKEEWKEEKKGRDGSHRSSFLLFFFIALPSFFLLLSWSWTRG* 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0925 1174 SUPERFAMILY L domain-like 222 698 - -
Vvi1g0925 1174 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 549 684 IPR044974 GO:0006952
Vvi1g0925 1174 MobiDBLite consensus disorder prediction 1119 1145 - -
Vvi1g0925 1174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 174 IPR027417 -
Vvi1g0925 1174 Gene3D - 2 76 IPR027417 -
Vvi1g0925 1174 MobiDBLite consensus disorder prediction 1110 1145 - -
Vvi1g0925 1174 PRINTS Disease resistance protein signature 474 490 - -
Vvi1g0925 1174 PRINTS Disease resistance protein signature 18 32 - -
Vvi1g0925 1174 PRINTS Disease resistance protein signature 114 128 - -
Vvi1g0925 1174 Gene3D Ribonuclease Inhibitor 779 979 IPR032675 -
Vvi1g0925 1174 Gene3D Ribonuclease Inhibitor 319 493 IPR032675 -
Vvi1g0925 1174 Gene3D Ribonuclease Inhibitor 494 778 IPR032675 -
Vvi1g0925 1174 Pfam NB-ARC domain 11 146 IPR002182 GO:0043531
Vvi1g0925 1174 SUPERFAMILY L domain-like 654 963 - -
Vvi1g0925 1174 Gene3D - 79 164 IPR042197 -
Vvi1g0925 1174 ProSiteProfiles Leucine-rich repeat profile. 830 852 IPR001611 GO:0005515
Vvi1g0925 1174 SMART LRR_typ_2 547 570 IPR003591 -
Vvi1g0925 1174 SMART LRR_typ_2 641 664 IPR003591 -
Vvi1g0925 1174 SMART LRR_typ_2 476 499 IPR003591 -
Vvi1g0925 1174 SMART LRR_typ_2 735 757 IPR003591 -
Vvi1g0925 1174 SMART LRR_typ_2 500 523 IPR003591 -
Vvi1g0925 1174 SMART LRR_typ_2 828 851 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0925 Vvi-Chr1 10129789 10136219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0925 470 796 WRKY Transcription Factor Family AT4G12020 28.612 2.90e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0925 - - vvi:100263854 2264.96