Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0924 ATGTTACTCTGCACAAAATCATTTCAACCCATGGTTACTCTAAGACTGCTTCAAATTAATCATGTTCAATTGGGAGGGAATTTCAAAAATATACCCTCTGAGCTGAAGTGGCTACAATGGAAGGGATGTCCTTTGAAAACTCTTCCTTCTACTTTCTGTCCTCGGAAACTTACTGTCCTTGATCTTTCAGAAAGTAAGATTGAACGAGTGTGGGGCTGCCACAATAAAAAGGTGGCTGAGAACTTGATGGTTATGAATCTCAGTGGATGCAATAGTCTGACTGATCTTCCTGATGTATCTGGTCATCAGACATTGGAAAAGTTGATTCTTGAGCGTTGTTTATCTCTGGTTACAATTCATAAATCAGTTGGAGACCTTAGGACATTGCTCCACTTGAATCTGATGGGCTGCTCGAACCTCCTGGAATTTCCAAGTGACGTTTCTGGATTGAGACATCTTGAGATCTTTAACCTCTCAGGTTGCACAAAACTGAAAGAATTACCAGAGGACATGAGCAGTATGACATCTTTGAGAGAGCTTCTTGTTGATAAAACAGCAATAGTGAATCTACCTGATTCAATCTTCCGTCTCAAGAAACTCGAAAAATTCAGTTTAGATTCTTGCTCATCATTGAAGCAACTACCTGATTGCATAGGGAGGCTAAGTTCCCTGAGAGAGCTTTCTCTTAATGGTTCTGGTTTAGAAGAACTACCTGATTCTATTGGCTCTCTGACAAACCTTGAGAGACTAAGTTTAATGAGGTGTAGATTGCTCTCTGCAATTCCTGATTCTGTTGGCAGGCTCAGATCATTAATAGAACTTTTTATTTGTAATAGTTCTATCAAAGAACTTCCAGCTTCAATTGGTTCACTATCCCAGTTGAGATACCTTTCATTAAGTCATTGTCGATCTCTGATCAAGTTGCCTGATTCCATTGAAGGGTTAGTGTCTTTGGCAAGGTTTCAGCTAGATGGGACGTTACTCACTGGAGTACCAGACCAGGTTGGCTCCTTGAACATGCTAGAGACACTTGAGATGCGGAATTGCGAAATTTTCAGTTCTTTTCCTGAGATCAATAATATGTCGAGTTTAACTACTTTGATCCTGGATAATTCTCTAATAACGGAGTTGCCGGAGTCTATAGGAAAGTTGGAAAGACTTAACATGTTAATGCTGAACAACTGCAAGCAGCTTCAGAGACTACCAGCTTCAATTAGAAAATTAAAAAATTTGTGCTCCTTGCTAATGACAAGAACTGCTGTGACAGAATTGCCTGAAAATTTTGGGATGCTCTCAAACTTAAGAACATTAAAGATGGCTAAACATCCAGATCCTGAAGCCACTGGAGAACATACGGAGCTGACAAATCTAATACTACAAGAGAACCCTAAGCCTGTTGTTCTTCTAATGTCTTTCTCAAATCTTTTCATGCTAAAAGAACTGGATGCTCGTGCTTGGAAAATATCTGGCAGTATTTCTGATTTTGAGAAGTTGTCTTCATTAGAAGATTTAAATCTTGGTCATAATAATTTTTGCAGCCTCCCATCTAGTTTGCAGGGCCTTTCAGTTCTCAAAAATCTGTTTTTACCCCACTGTAAGGAGATCAATTCTCTCCCTCCACTTCCCTCAAGTTTGATTAAGTTGAATGTTTCAAATTGTTGTGCATTGCAAAGTGTGTCGGACCTGTCAAATTTGAAGAGTTTAGAGGACCTGAACCTCACAAACTGCAAGAAAATAATGGATATTCCTGGCCTTCAATGCTTGAAGTCATTGAAAAGGTTTTATGCAAGTGGTTGCAATGCATGTCTTCCAGCGCTAAAGAGTAGGATCACTAAGGTTGCATTGAAGCATTTATACAATTTGAGCGTCCCAGGGAGTGAAATCCCAAATTGGTTTGTCCAAGAAATCCCTTGCTTTTCTAGTCACAGAAACCTTAAAGTTACAGGTGTGGTCATCGGTGTCGTGGTCTGTGTCTCTGTCAACCCTCAAATGCATAATGCTTACAGTGATAAGGTCCCAGTAATAGTGGATGTTCAAGCAAAGCTCTTCAGACGTAACGAGGACAAACCAGTACATTCTACTACACTGAAGTTAGAGGGAGTTGCTGACACAAATGAAGATCAGCTCTACTTGTGCCGTTTTCTGGACTTCAAATCACTAGTCCTTATGTTGAAAGATGGTGATAAGATACAAGTGGCTGTGCGAGACAAACCACGTTATAATGGACTTGTGCTGAAGAAGTATGGGATCCATCTGATTTTTGAAAATGACGATGATGAAGATGAAGATGAAGAAGGGTTGGATGAATCCCAACAATCGATATCAGAGAGACTAGTCAAATTTCTCAAAAACATGTGA 2358 0.3978 MLLCTKSFQPMVTLRLLQINHVQLGGNFKNIPSELKWLQWKGCPLKTLPSTFCPRKLTVLDLSESKIERVWGCHNKKVAENLMVMNLSGCNSLTDLPDVSGHQTLEKLILERCLSLVTIHKSVGDLRTLLHLNLMGCSNLLEFPSDVSGLRHLEIFNLSGCTKLKELPEDMSSMTSLRELLVDKTAIVNLPDSIFRLKKLEKFSLDSCSSLKQLPDCIGRLSSLRELSLNGSGLEELPDSIGSLTNLERLSLMRCRLLSAIPDSVGRLRSLIELFICNSSIKELPASIGSLSQLRYLSLSHCRSLIKLPDSIEGLVSLARFQLDGTLLTGVPDQVGSLNMLETLEMRNCEIFSSFPEINNMSSLTTLILDNSLITELPESIGKLERLNMLMLNNCKQLQRLPASIRKLKNLCSLLMTRTAVTELPENFGMLSNLRTLKMAKHPDPEATGEHTELTNLILQENPKPVVLLMSFSNLFMLKELDARAWKISGSISDFEKLSSLEDLNLGHNNFCSLPSSLQGLSVLKNLFLPHCKEINSLPPLPSSLIKLNVSNCCALQSVSDLSNLKSLEDLNLTNCKKIMDIPGLQCLKSLKRFYASGCNACLPALKSRITKVALKHLYNLSVPGSEIPNWFVQEIPCFSSHRNLKVTGVVIGVVVCVSVNPQMHNAYSDKVPVIVDVQAKLFRRNEDKPVHSTTLKLEGVADTNEDQLYLCRFLDFKSLVLMLKDGDKIQVAVRDKPRYNGLVLKKYGIHLIFENDDDEDEDEEGLDESQQSISERLVKFLKNM* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0924 785 Gene3D Ribonuclease Inhibitor 443 655 IPR032675 -
Vvi1g0924 785 ProSiteProfiles Leucine-rich repeat profile. 567 589 IPR001611 GO:0005515
Vvi1g0924 785 SMART LRR_typ_2 361 384 IPR003591 -
Vvi1g0924 785 SMART LRR_typ_2 408 430 IPR003591 -
Vvi1g0924 785 SMART LRR_typ_2 268 291 IPR003591 -
Vvi1g0924 785 SMART LRR_typ_2 498 520 IPR003591 -
Vvi1g0924 785 SMART LRR_typ_2 174 197 IPR003591 -
Vvi1g0924 785 SMART LRR_typ_2 315 338 IPR003591 -
Vvi1g0924 785 SMART LRR_typ_2 221 244 IPR003591 -
Vvi1g0924 785 ProSiteProfiles Leucine-rich repeat profile. 500 522 IPR001611 GO:0005515
Vvi1g0924 785 Gene3D Ribonuclease Inhibitor 166 304 IPR032675 -
Vvi1g0924 785 Gene3D Ribonuclease Inhibitor 305 442 IPR032675 -
Vvi1g0924 785 SUPERFAMILY L domain-like 9 350 - -
Vvi1g0924 785 Pfam Leucine rich repeat 245 303 IPR001611 GO:0005515
Vvi1g0924 785 Gene3D Ribonuclease Inhibitor 4 165 IPR032675 -
Vvi1g0924 785 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 8 183 - -
Vvi1g0924 785 SUPERFAMILY L domain-like 257 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0924 Vvi-Chr1 10112521 10117954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0924 221 468 WRKY Transcription Factor Family AT4G12020 28.287 7.49e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0924 - - vvi:100241580 1494.18