Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0919 ATGAATCTCACATCTTCACTAGCCGTCCTTCATCTCTTCTTCTTCTTCTTCTTCTTCTCCTCTTTCTTTGCTGTCGCTGTTGCGATTGAAGACGACGTCGTTTGTCTCCAAGGCCTCAAGGACTCTCTTACAGACCCAGATGATAAGATCAGCACTTGGAGGTTCACCAACACCTCTGCCTCCTTTATCTGCAATCTCGTCGGCGTCTCTTGCTGGAACGCGCAGGAGAGCCGCATCATCAGCCTCCAACTTCCTGATATGAACCTCATCGGTACCTTACCCGACTCCCTTCAGCACTGCCGAAGTCTCCAGAGTCTTGGTCTCTCTGGTAATCGTATCTCGGGTTCCATCCCTGACCAAATCTGTACCTGGTTGCCCTATGTCGTAACCCTAGATCTGTCCCATAACGACCTCACCGGTCCAATTCCACCGGAAATGGTTAATTGCAAGTTTTTAAACAATCTGATTCTTAACAACAATGGGTTATCGGGTATGATTCCCTACGAGATTGGCCGACTTCCTAGGCTCAAGAAGTTTTCCGTTGCCAACAATGATCTCTCCGGTTCAATACCGTCCGAGTTGTCGAAATTCGAAGACGATGCCTTCGATGGGAACAATGGACTCTGCCGTAAGCCTCTAGGAAAGTGCGGTGGACTGAGTAGTAAAAGCCTTGCCATTATTATTGCGGCGGGGATTTTTGGTGCTGCAGGTTCGTTGCTATTAGGTTTTGCGCTTTGGTGGTGGTTTTTCGTTAGGCTGAATCGGAAAAAGAGAGGCTACAGTGGTGGTGATAGTGGCAAGATTGGTGGTAGTTGGGCGGAGCGGTTGCGGATGCACAAACTGGTTCAGGTGTCGCTGTTCCAGAAACCCATTGTAAAGATCAAGTTAGCCGATTTGATGGCGGCTACTAATAATTTTGACCCTGAATATCTTCTTTGTTCTACAAGAACAGGGGTTTCCTATAAGGCTGTGTTGCTGGATGGATCTGCTTTGGCTATCAAACGTCTCAGTGCCTGTAAGCTCAGTGACAAGCAGTTTCGGTCTGAAATGAATAGGTTGGGGCAGCTTAGACACCCCAATTTGGTTCCCTTATTGGGTTTTTGTGCCGTAGAAGAAGAGAAACTTTTAGTGTATAAGCACATGCCTAATGGGACCCTGTATTCTCTTTTGCATGGGAGTACTAGTTTTCATTCACAGCACCACTCGATTGATTGGCCTACTAGGCTTAGGATTGGTGTAGGTGCTGCTAGAGGGCTTGCCTGGCTTCACCACGGTTGTCAACCCCCATACATGCACCAGAACATTAGTTCCAGTGTGATTCTTCTTGATGATGATTATGATGCTCGGATAACGGATTTTGGGTTAGCAAGGCTTGTGGCTTCTGCTGACTCTAATGATAGTTCTTTTGTTAATGGGGACCTTGGAGAATTTGGTTATGTGGCTCCAGAGTACTCGAGCACTATGGTCCCTTCACTAAAGGGCGATGTTTATGGTTTTGGGGTTGTGCTTCTTGAGCTGGTGACTGGGCAGAAGCCTCTGGAGGTTAATAATGGAGATGAAGGTTTTAAAGGGAACCTGGTGGATTGGGTTATTCAGTTGCTGATATCTGGTAGAAGCAAGGATGCAATTGATAAGGATTTGTGGGGGAAAGGTTATGATGATGAAATTGTGCAGCTCATGAGGGTTGCTTGTAGTTGTGTTGGTTCTAGGCCCAAGGAAAGGCCTTCTATGTACAATGTTTACCAGTCATTGAAGAGCATGGCAGAGAAACATGGTTTCTCAGAGCAGTATGATGAATTTCCATTGATGTTTAGCAAGCAGGATCCTGACTATTAG 1836 0.4646 MNLTSSLAVLHLFFFFFFFSSFFAVAVAIEDDVVCLQGLKDSLTDPDDKISTWRFTNTSASFICNLVGVSCWNAQESRIISLQLPDMNLIGTLPDSLQHCRSLQSLGLSGNRISGSIPDQICTWLPYVVTLDLSHNDLTGPIPPEMVNCKFLNNLILNNNGLSGMIPYEIGRLPRLKKFSVANNDLSGSIPSELSKFEDDAFDGNNGLCRKPLGKCGGLSSKSLAIIIAAGIFGAAGSLLLGFALWWWFFVRLNRKKRGYSGGDSGKIGGSWAERLRMHKLVQVSLFQKPIVKIKLADLMAATNNFDPEYLLCSTRTGVSYKAVLLDGSALAIKRLSACKLSDKQFRSEMNRLGQLRHPNLVPLLGFCAVEEEKLLVYKHMPNGTLYSLLHGSTSFHSQHHSIDWPTRLRIGVGAARGLAWLHHGCQPPYMHQNISSSVILLDDDYDARITDFGLARLVASADSNDSSFVNGDLGEFGYVAPEYSSTMVPSLKGDVYGFGVVLLELVTGQKPLEVNNGDEGFKGNLVDWVIQLLISGRSKDAIDKDLWGKGYDDEIVQLMRVACSCVGSRPKERPSMYNVYQSLKSMAEKHGFSEQYDEFPLMFSKQDPDY* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0919 611 ProSiteProfiles Protein kinase domain profile. 306 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0919 611 Gene3D Phosphorylase Kinase; domain 1 266 380 - -
Vvi1g0919 611 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Vvi1g0919 611 SUPERFAMILY L domain-like 28 198 - -
Vvi1g0919 611 Gene3D Ribonuclease Inhibitor 29 217 IPR032675 -
Vvi1g0919 611 Gene3D Transferase(Phosphotransferase) domain 1 381 607 - -
Vvi1g0919 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 267 380 - -
Vvi1g0919 611 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 69 586 - -
Vvi1g0919 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 29 217 - -
Vvi1g0919 611 Pfam Protein tyrosine and serine/threonine kinase 330 584 IPR001245 GO:0004672|GO:0006468
Vvi1g0919 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 381 606 - -
Vvi1g0919 611 SUPERFAMILY Protein kinase-like (PK-like) 282 584 IPR011009 -
Vvi1g0919 611 CDD STKc_IRAK 314 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0919 Vvi-Chr1 10044523 10046358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0919 13 608 Receptor kinase-like Gene Family AT1G27190 67.169 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vvi1g0919 PK_Tyr_Ser-Thr 2.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0919 - - vvi:100262086 1176