Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0917 ATGTCTCGTTCCTGCTCTCAGTGCGGAAATAATGGCCACAACTCCCGCACCTGCACGGAGTCCGGTGGTGCCGGCGCTGCGGCCAACGACATCATGCTCTTCGGCGTCCGTATCACGGAAGGCGCGTTTAGGAAGAGTGCTAGTATGACTAATCTCTCTCAATACGAACAGCCTCAGGACTCCAACGCCGATGCTGGCTATGCCTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGAAGGTAGGTAAAGGAGACTGGAGAGGAATCTCTAGAAACTTCGTCAAGACACGGACTCCTACTCAGGTGGCTAGCCATGCTCAGAAGTACTTTCTCCGGCGGAACAATCATAATAGGAGACGTCGTAGATCTAGTCTCTTCGACATCACCGCCGATACGTTTATGGGCTCTACAATATTGGAGGAAGATCAGGTCCACCAAGAGACCGTCTCTCCGCCTCAGTTACATTCACATCTAAATGGCAGTGCCGGAGGATTTCCGGTACCAACATTTCCGGTGACGATGGCTCCGGTAGTTTTACCAGTGGCTAGCAATGGCTCGATGGAGATTCTGACGCTAGGGCAAAGCAATCAAGCAAAGGGGCCGACCAAGCTCATCCGTCCCATACCGATTCTTCCAGTTCCACCATCTTCAAAAATGGCAGATCTGAATTTGAACATTCCATCCACGGCGGATCCCTTGCCTCTGTCACTGAAGCCGTCCTCGTCAACCTCCACAAGTCCGCAGTCACCTACGGCGACGAGGCACTCCTCAGCTTTTCAGGCTATGTCGGAGAGCTTCAACAGTAGTACTGGCGACAACATCATTAGTGTCGCGTAA 903 0.5282 MSRSCSQCGNNGHNSRTCTESGGAGAAANDIMLFGVRITEGAFRKSASMTNLSQYEQPQDSNADAGYASDDVVHASARSRERKRGVPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNHNRRRRRSSLFDITADTFMGSTILEEDQVHQETVSPPQLHSHLNGSAGGFPVPTFPVTMAPVVLPVASNGSMEILTLGQSNQAKGPTKLIRPIPILPVPPSSKMADLNLNIPSTADPLPLSLKPSSSTSTSPQSPTATRHSSAFQAMSESFNSSTGDNIISVA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0917 300 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
Vvi1g0917 300 PANTHER TRANSCRIPTION FACTOR KUA1 1 247 - -
Vvi1g0917 300 MobiDBLite consensus disorder prediction 1 22 - -
Vvi1g0917 300 FunFam transcription factor MYB1R1 86 137 - -
Vvi1g0917 300 ProSiteProfiles SANT domain profile. 83 136 IPR017884 -
Vvi1g0917 300 Gene3D - 86 137 - -
Vvi1g0917 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Vvi1g0917 300 CDD SANT 87 132 IPR001005 -
Vvi1g0917 300 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Vvi1g0917 300 SMART sant 84 134 IPR001005 -
Vvi1g0917 300 Pfam Myb-like DNA-binding domain 87 132 IPR001005 -
Vvi1g0917 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 83 134 IPR006447 GO:0003677
Vvi1g0917 300 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g0917 300 MobiDBLite consensus disorder prediction 253 300 - -
Vvi1g0917 300 SUPERFAMILY Homeodomain-like 82 137 IPR009057 -
Vvi1g0917 300 MobiDBLite consensus disorder prediction 256 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0917 Vvi-Chr1 10009915 10010976 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi1g0917 Myb_DNA-binding 9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0917 - - vvi:100253576 546.199