Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0913 ATGTCTTTTGTCAATTGTAGAATTGACACTGCAGGTGTCATAGCAAGGGTGAAAGAGTTATTTAAGGGGCATAGGGATCTAATTTTGGGTTTCAATACCTTCTTGCCAAAGGGATATGAGATCACCCTCCCACTTGAGGATGAACAGCCTCCAGTTAAGAAGCCTGTTGAATTTGAAGAAGCCATCAATTTTGTGAACAAGATTAAGACACGGTTTCAAGGAGATGATCATGTTTATAAGTCATTTTTAGACATTTTGAACATGTATCGGAAGGAAAACAAGTCCATCACTGAGGTCTACCAAGAGGTTGCTGCACTTTTCCATGATCACCCAGACCTGCTTGTGGAGTTCACTCATTTTCTGCCCGATACTTCAGCTGCCTCTACTCAATATGCGCCATCTGGTAGGAATCCTATGCACCGAGAGAGGGGCTCTCTCGTACCTCCATTGCGACAGATTCTTACTGACAAGAAGGAAAGGATTACTGCTTCACATGCTGACCGTGACCTCAGTGTCGACCGTCCTGACACAGACCATGATAGAATAATCATGAGAGCAGACAATCAACGGAGGGGTGGTGAAAAAGAAAAGGAGAGGAGAGATGACAGAGACCGGAGAGAGCGAGATGATAGAGACTTTGACCATGATGGCAATAGGGACTTTAATGGCATGCCACGTGTTCCCCACAAAAGGAAAGTTACCCGCAGAGTTGAAGACTCTGTTGCTGACCAAATAAACCAAGGTGGAGAAGGTGCTGAAAACTATGGAATGCGGCCAATGTCATCTTCTTATGATGATAAAAATGCCTTGAAAAGTATGTACAACCAGGAGTTTGTTTTCTGTGAGAAAGTGAAGGAGAAATTACGACAGTCTGATAGCTACCAGGAATTTTTGAAATGCCTTCATATTTATAGCAAGGAAATAATTACTCGAACAGAATTGCAATCTCTGGTTGGAGATTTAATTGGAAAGTATCCTGATCTTATGGACGAGTTCAATGAATTTTTGACCCGTTGTGAGAAGATTGATGGATTTCTTGCTGGTGTTATGAGTAAAAGACATTTACCCAGATCAGTGAAGATAGAGGATAGGGATAGAGATCGAGATCGTGAAAGGGATGATAGGGACAAAGATAGAGACCGGGAAAATAGAGAGAGGGATAGACTTGATAAAAGTGGAGGCTTTGGCAATAAAGATGCAGTTAATCAAAAGATGTCTTTGTTCCAAAACAAGGAGAAGTATATGGCAAAGCCCATTCAAGAACTTGATCTCTCTAACTGTGAGCGCTGTACTCCCAGTTATCGACTTCTTCCAAAGAATTATCCGATACCTTCTGCAAGCCAGAGAACAGAACTTGGTGCAGAAGTGTTGAATGACTATTGGGTGTCTGTCACTTCGGGAAGTGAGGATTATTCTTTTAAGCACATGCGCAAAAACCAATATGAAGAGAGTCTATTCCGATGTGAAGATGACAGGTTTGAACTGGACATGCTGTTAGAGTCTGTAAATGTAACAACTAAGCGTGTGGAAGAATTGTTAGATAAGATCAACAATAATACTATCAAAACAGATAGTCCAATTCGTATTGAGGACTACTTCACAGCTCTGAATCTTAGATGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTGATGGACGTATTGAGGAAGAATGCAACTCTTGCTTTGCCAGTTATACTAACTCGCTTGAAACAGAAACAAGAGGAGTGGGCTAGGTGTCGTTCTGATTTTAATAAAGTTTGGGCAGAAATTTATGCCAAGAACTATCACAAATCTCTTGATCATCGCAGCTTCTATTTCAAGCAACAGGACTCAAAGAGCTCGAGCACAAAGGCTTTATTGGCTGAGATTAAAGAAATTAGTGAGAAGAAGCGGAAAGAGGATGATGTGCTTCTTGCTATTGCTGCTGGAAATAGACGACCTATCATTCCAAACTTGGAATTTGAGTACCCTGATTCAGACATTCATGAAGATTTGTACCAGCTTATCAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAGGTTATGAAAATTTGGACAACCTTCCTGGAACCTATGCTTGGGGTTCCTTCTCGGCCCCAGGGTGCAGAGGACTCTGAAGATGTTGTGAAGACTAAGAGTCATGCTGCCAAGAATGGTGCTGCAAGCATTGGAGAAAGTGACGGGAGTCCTGGTGGTGGTGCAAGTGCGACAAACACCAAACAGATTAATTCATCTAGAAATGGAGATGAAACTATTCCACCTGAGCAATCAAGTTCTTGCAGGGTTTGGATGGTAAATGGAGATAATGGGGTTAAAGAAGATGGTTCTCTTGATGCAGACCGTATGCCACGTAAGGCTGATACTTTTTGTGCTAGTACTCAACAAGGGAAAATGCAGACCAGTGCTGCTATGGCTGATGAAATGTCTGGGGTCAGCAAACAAGCTACTTGTAATGAACGGGTGACCAATTCAAATGCCTCCCTTGCTAGTGGAGCAGAGCAGAGTCATGGAAGAACCAACATGGAAAATACGTCAGGACTTAATGCTACTCCTTCCAGAGCTAGTAATACTGCTCTTGAGAGTGGGCTCGAATTGAGACCAAGTAATGAAGTTTTACCTTCATCAGAGGTTGGTGATTGTATCAGACCAACTATATCTACAAATGGTGTGATGACAGAAGGTGTCAAAGCTCACAGATATCATGAAGAATCTGCTGGGAACTCAAAAATTGAAAGAGAAGAGGGTGAGTTATCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAGTCTATGGGGATGCCGGTGTTGAAGGTAAATCAAAGGATACTGCTGCAAGCAGGCAATATCAAACCAGACATGGAGTGGAAGAAATATGTTGTGGAGAAGCTGGGGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAGGAAAGTGCTCAGAGGTCATCAGAAGACAGTGAGAACGCTTCTGAGAATGGTGATGTTTCAGGAAGTGAATCAGGTGAGGGTGAGGAATGCTCTCGTGAAGAGCATGAGGAAGATGGGGATCATGATGAGCATGATAACAAGGCTGAGAGTGAAGGTGAGGCTGAAGGAATGGCTGATGCACATGATGTTGAAGGAGATGGAACATTGTTACCATTTTCAGAACGTTTTCTACTAACTGTGAAGCCTCTTGCAAAGCATGTTCCTCCATCTTTACAGGACAAAGAGAAAAACTCTCGGGTTTTTTATGGAAATGATTCTTTTTATGTGCTTTTTAGGCTTCATCAAACACTGTATGAGAGAATGCAGTCAGCAAAGCTCAATTCATCTTCAGGTGAAAGGAAATGGAGAGCTTCAAGTGACACAAATTCTACTGATTTGTATGCCAGATTCATGAATGCACTTTACAATTTACTTGATGGTTCTTCTGACAATACAAAATTTGAGGATGATTGCCGAGCAATCATAGGAACTCAGTCATATGTTCTATTTACATTAGATAAGCTGATATATAAACTTGTCAAGCAGCTGCAAACAGTTGCAACAGATGAGATGGACAACAAGCTCCTCCAACTTTATGCATATGAAAAATCAAGAAAGCCTGGGAGATTTGTCGATATGGTTTATTATGAAAACTCCCGTGTTCTTCTTCATGACGAGAACATTTATCGCATTGAGTGTTCGTCTGCTCCCACTCATTTGACCATTCAGCTTATGGACAATGGGCATGATAAGCCTGAAGTGACTGCTGTTTCCATGGACCCTAATTTTGCAGCTTATCTTAACAGTGATTTCCTTTCAGTTGTTAATGAAAAAAAGAAATCTGGAATTTTTTTGAGGAGAAACAAGCGCAAATATGCACGAGGAGACGAGTTTTCTGTTGCGTGCCAGGCCATGGAAGGACTTCAAGTTGTCAATGGTCTTGAATGTAAGATAGCATGCAGTTCATCCAAGGTATCACATGTTTTATACAAGTCAATTGCTGTCAGCAATATTTTGTAG 4005 0.415 MSFVNCRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPVKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFHDHPDLLVEFTHFLPDTSAASTQYAPSGRNPMHRERGSLVPPLRQILTDKKERITASHADRDLSVDRPDTDHDRIIMRADNQRRGGEKEKERRDDRDRRERDDRDFDHDGNRDFNGMPRVPHKRKVTRRVEDSVADQINQGGEGAENYGMRPMSSSYDDKNALKSMYNQEFVFCEKVKEKLRQSDSYQEFLKCLHIYSKEIITRTELQSLVGDLIGKYPDLMDEFNEFLTRCEKIDGFLAGVMSKRHLPRSVKIEDRDRDRDRERDDRDKDRDRENRERDRLDKSGGFGNKDAVNQKMSLFQNKEKYMAKPIQELDLSNCERCTPSYRLLPKNYPIPSASQRTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKTDSPIRIEDYFTALNLRCIERLYGDHGLDVMDVLRKNATLALPVILTRLKQKQEEWARCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDSKSSSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPIIPNLEFEYPDSDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDSEDVVKTKSHAAKNGAASIGESDGSPGGGASATNTKQINSSRNGDETIPPEQSSSCRVWMVNGDNGVKEDGSLDADRMPRKADTFCASTQQGKMQTSAAMADEMSGVSKQATCNERVTNSNASLASGAEQSHGRTNMENTSGLNATPSRASNTALESGLELRPSNEVLPSSEVGDCIRPTISTNGVMTEGVKAHRYHEESAGNSKIEREEGELSPNGDFEEDNFAVYGDAGVEGKSKDTAASRQYQTRHGVEEICCGEAGGENDADADDEGEESAQRSSEDSENASENGDVSGSESGEGEECSREEHEEDGDHDEHDNKAESEGEAEGMADAHDVEGDGTLLPFSERFLLTVKPLAKHVPPSLQDKEKNSRVFYGNDSFYVLFRLHQTLYERMQSAKLNSSSGERKWRASSDTNSTDLYARFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLYAYEKSRKPGRFVDMVYYENSRVLLHDENIYRIECSSAPTHLTIQLMDNGHDKPEVTAVSMDPNFAAYLNSDFLSVVNEKKKSGIFLRRNKRKYARGDEFSVACQAMEGLQVVNGLECKIACSSSKVSHVLYKSIAVSNIL* 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0913 1334 Pfam Paired amphipathic helix repeat 77 121 IPR003822 GO:0006355
Vvi1g0913 1334 Pfam Paired amphipathic helix repeat 292 336 IPR003822 GO:0006355
Vvi1g0913 1334 Pfam Paired amphipathic helix repeat 8 35 IPR003822 GO:0006355
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 963 1039 - -
Vvi1g0913 1334 SUPERFAMILY PAH2 domain 50 123 IPR036600 GO:0006355
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 832 864 - -
Vvi1g0913 1334 PANTHER SIN3B-RELATED 3 1227 IPR039774 GO:0003714
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 153 239 - -
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 737 767 - -
Vvi1g0913 1334 Gene3D Paired amphipathic helix 2 36 IPR036600 GO:0006355
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 972 986 - -
Vvi1g0913 1334 SMART hdac_interact2seq4b 426 526 IPR013194 -
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 128 240 - -
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 362 398 - -
Vvi1g0913 1334 FunFam Paired amphipathic helix SIN3-like protein 53 124 - -
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 907 923 - -
Vvi1g0913 1334 ProSiteProfiles PAH domain profile. 270 339 IPR003822 GO:0006355
Vvi1g0913 1334 Pfam Sin3 family co-repressor 428 520 IPR013194 -
Vvi1g0913 1334 Pfam C-terminal domain of Sin3a protein 1083 1321 IPR031693 -
Vvi1g0913 1334 Gene3D Paired amphipathic helix 52 125 IPR036600 GO:0006355
Vvi1g0913 1334 ProSiteProfiles PAH domain profile. 54 124 IPR003822 GO:0006355
Vvi1g0913 1334 FunFam Paired amphipathic helix protein SIN3 267 341 - -
Vvi1g0913 1334 Gene3D Paired amphipathic helix 267 341 IPR036600 GO:0006355
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 907 932 - -
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 1019 1039 - -
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 362 394 - -
Vvi1g0913 1334 MobiDBLite consensus disorder prediction 699 767 - -
Vvi1g0913 1334 ProSiteProfiles PAH domain profile. 1 38 IPR003822 GO:0006355
Vvi1g0913 1334 SUPERFAMILY PAH2 domain 6 37 IPR036600 GO:0006355
Vvi1g0913 1334 SUPERFAMILY PAH2 domain 269 337 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0913 Vvi-Chr1 9948756 9961043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0913 8 73 WRKY Transcription Factor Family AT4G12020 46.970 1.18e-10 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi1g0913 Sin3a_C 1.6e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0913 K11644 - vvi:100243213 2465.65