Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0907 ATGGCTGCTGCAATTCAGCCATGGCATCTCATCTCCCTGTTTTTTGTTCCCCTCCTTTCTCTTGTTCATTTATCTGCCTGTCAACCCAATTCCCCTCGGAATATTGAAACTTTCTATCCATTCCAGCCTCCTCCAAATCCAACTCCAGACAATCCTCAAATTTCCCCACCAACTCCCATAGAACCACCACCACCACCACTGTTGCTGTCACCGCCACCGCCACCACCGCCATCATCAAAGTCATCATCAAGCAATGCTGTTGCTAAGGCAGTCGCTGCAACAGCAGCCAGCACAATAGTTGTTGCCGGGTTGTTCTTCCTTCTGTTCCAAAGGTACACGGTTGCAAGGAGGAGAAGACAGAAAGATGGTAATGATCCACGAGGAGGTGGTGAACATGTGGTGCATCATACTGAGTTCTCAAGATTCAATGGAAATCTCAAGGGGCTGATTGTTGATGAGAATGGTTTGGACGTGCTTTATTGGAAGCAGCTTGAAGGGGGAAGCAGGAAGAATAGTTTCCGTAAAGAGGCTCTACATAATCTGAAAGATGAAGAAAAAAGGATGAGTCGGAATGGAGATCAGAGGGCAAAGCCTGAGCCTATACAAGAAATTCCTTTGCTACGAGGGAAGTCTTCAACTTCCTATGATGAAGTTCAAGAAGAAGTGGAAAATCTGAATCGGTTTTCAGCCCCCCCTCCTTTGTCACAATCTTTTGAGATTTCTCTTGAGGCTGTGGGAAAACCAGAATCATCAATTCAACCATCCACATCTCCCCCACCCCCACCCCCACCCCCACCCCCACCACCACCACCACCACCACCACCTATATTGGCAATTCCACGGCAGCCAAGGCCTCCACCACCTCCCCCACCACCAATCCCAGCTAAGATAAATCCCACACCACCACCACCACCACCACCTAAGGCAGGTGGTTTTACTTCATCAACAAAAGAAGCATCATCGGTGCCCAAAGGGGTGCCTAATGGCAGTAAACTAGGAGAGTCTTCATCTGGATATAGCAAGGCAGGGACTGGAAATGGTCAGGTGGCGCTGAAGCCATTGCATTGGGATAAAGTGAACACTAACGCTAATCATTCAATGGTATGGCACAAAATTGATGGCGGTTCTTTCAGCTTCGATGGTGACCTCATGGAAGCACTGTTTGGATTTGTTGCTACTAATCGGAGATCTCCTCAAAGAAACCATAACAACCCAAATGGTGCCAGCTCAAGTCAATCGGCTCAGATTTTCATCCTTGATAGTCGAAAGTCCCAAAACACAGCAATTGTGCTCCGATCTTTAGCAATCTCGCGAAAAGAGATCCTCAACGCACTCATTGAGGGCCAAGACCTGAATGCAGATACTCTTGAAAAGCTTACAAAAATTGCCCCAACTAAAGAAGAAGAATCCCAAATCCTTGCATTCAAGGGAGACCCCACAAGACTGGCTGATGCTGAATCCTTCCTCTACCATATCCTAAAAGCTGTTCCATCAGCATTTGATCGTCTCAGTGCCATGTTTTTCAGATTGAATTATGACTCAGAGATTCTCCATCTCAGGGAATGTTTACAAACACTTGAATTGGGTTGCAAGGAGCTTCGAACTCGTGGACTTTTCTTAAAACTTTTGGAAGCCATACTCAAGGCAGGCAATCGCATGAATGCTGGAACTTCCAGAGGGAATGCCCAAGCTTTTAACCTTGCTGCTCTTCAAAAGCTTTCTGATGTTAAAAGCACTGATGGAAAAACTACGTTACTTCACTTTGTGGTGGAAGAAGTAGTCCGTTCTGAGGGAAAACGTTGTGTTTTGAACCGAAATCGCAGCTTGAGTCGCAGTAGCAGTCAGAGCAGCAGCAACAGTAGTCTGTATTCTGAGAACTCGACATCAAGAGAGGATAGAGAAAAGGAATACATAATGATTGGTTTACCAGTGGTAGGAGGCCTAAGTGCTGAATTCTCTAATGTAAAGAAAGCAGCTGTAATAGACTACAATGCCTTTGCTGGCGTATGTTCAACTCTCACAGCCCATTCCACTGAAATCAAGCAGTTTGTGGCACAATTTGCCAACAGTGATGGAGGATTTTTGAGGAAGATGAAAAGTTTTCTCAAAGCATCTGATGAAGAATTAAGGGAAGTGAGAGAAGAGCAAACAAGGGTAATGGAACTGGTAAGGAGAACAACAGAATATTATCAACCACGATCTTCAAAGAACAAAGAGGCAAGCCCGGTTCAATTATTTGTTATAGTAAAAAATTTCCTGGGTATGGTCGATCAGGTCTGTGTTGATATTGCTAGAAATCTACAACGGAGGAAAACAACCACAGCAAGTTTGGGGTCATCAACAAAGTCACCACCATCAAGAATTCCAGTGAAATTTCCAAACTTGCCGCCAAATTTCATGTCAGACAAGTCCAGGAACTCTTCTTCTAGTGATTCAGAAGATGAGTTCTGA 2451 0.4504 MAAAIQPWHLISLFFVPLLSLVHLSACQPNSPRNIETFYPFQPPPNPTPDNPQISPPTPIEPPPPPLLLSPPPPPPPSSKSSSSNAVAKAVAATAASTIVVAGLFFLLFQRYTVARRRRQKDGNDPRGGGEHVVHHTEFSRFNGNLKGLIVDENGLDVLYWKQLEGGSRKNSFRKEALHNLKDEEKRMSRNGDQRAKPEPIQEIPLLRGKSSTSYDEVQEEVENLNRFSAPPPLSQSFEISLEAVGKPESSIQPSTSPPPPPPPPPPPPPPPPPPILAIPRQPRPPPPPPPPIPAKINPTPPPPPPPKAGGFTSSTKEASSVPKGVPNGSKLGESSSGYSKAGTGNGQVALKPLHWDKVNTNANHSMVWHKIDGGSFSFDGDLMEALFGFVATNRRSPQRNHNNPNGASSSQSAQIFILDSRKSQNTAIVLRSLAISRKEILNALIEGQDLNADTLEKLTKIAPTKEEESQILAFKGDPTRLADAESFLYHILKAVPSAFDRLSAMFFRLNYDSEILHLRECLQTLELGCKELRTRGLFLKLLEAILKAGNRMNAGTSRGNAQAFNLAALQKLSDVKSTDGKTTLLHFVVEEVVRSEGKRCVLNRNRSLSRSSSQSSSNSSLYSENSTSREDREKEYIMIGLPVVGGLSAEFSNVKKAAVIDYNAFAGVCSTLTAHSTEIKQFVAQFANSDGGFLRKMKSFLKASDEELREVREEQTRVMELVRRTTEYYQPRSSKNKEASPVQLFVIVKNFLGMVDQVCVDIARNLQRRKTTTASLGSSTKSPPSRIPVKFPNLPPNFMSDKSRNSSSSDSEDEF* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0907 816 PANTHER FORMIN-RELATED 77 809 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi1g0907 816 SUPERFAMILY Formin homology 2 domain (FH2 domain) 416 772 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 606 626 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 246 346 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 606 629 - -
Vvi1g0907 816 Pfam Formin Homology 2 Domain 348 756 IPR015425 -
Vvi1g0907 816 PRINTS Proline rich extensin signature 40 56 - -
Vvi1g0907 816 PRINTS Proline rich extensin signature 62 74 - -
Vvi1g0907 816 PRINTS Proline rich extensin signature 254 279 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 771 787 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 35 83 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 179 234 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 179 197 - -
Vvi1g0907 816 Gene3D Formin, FH2 domain 359 782 IPR042201 -
Vvi1g0907 816 ProSiteProfiles Formin homology-2 (FH2) domain profile. 341 782 IPR015425 -
Vvi1g0907 816 SMART it6_source 341 771 IPR015425 -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 330 344 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 38 80 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 771 816 - -
Vvi1g0907 816 Coils Coil 695 715 - -
Vvi1g0907 816 MobiDBLite consensus disorder prediction 253 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0907 Vvi-Chr1 9877899 9880443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0907 1 813 FH2 protein (formin) Gene Family AT1G70140 48.507 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0907 - - vvi:104879926 936.791