Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0906 ATGGAGATAAGCGGTGTTCTTTCTCGGCGAAACATGCCGGACGAGATCGGTGGTTTCGATCTTTCACCTGGCCACTCTGAAGAAGAGGCTCATGTTCTCGCTGTTGATGATAGTCTAGTTGACCGAAAGGTCATTGAACGACTGCTCAAAATTTCTTCTTGTAAAGTGACGGCGGTGGACAGCGGAAGGAGAGCTCTGCAATTTCTTGGTTTAGATGAGGAGAAGAACTCAGCTGGTCTTGATGGTTTGAAAGTGGATCTAATCATCACTGATTACTGTATGCCTGGAATGACTGGATATGAATTGCTCAAGAAGATCAAGGAATCGTCCACTTTCCGGGAAACTCCGGTGGTAATCATGTCATCAGAAAACATCCTAACGCGAATAGACAGATGTTTGGAGGAAGGTGCAGAGGATTTCATAGTAAAGCCCGTAAAATTGTCGGACGTGAAGCGGCTGAAAGATTACATGACCAGAGAAGACAGAGATGGCAATGAGGGCAGAGGCATCAATAAAAGAAAGCTGGGAGAGGCATGCGATGTCTCTCCATCCTTATCATCATCACCACCGTCCATATCTTCATCATCCTCATCATGGTCAGCGCCATCTTCTCCCACGTCGTTAGACTCTCCCACTAGACGGCTCAAAACCTCCACATGTGATTAG 666 0.4655 MEISGVLSRRNMPDEIGGFDLSPGHSEEEAHVLAVDDSLVDRKVIERLLKISSCKVTAVDSGRRALQFLGLDEEKNSAGLDGLKVDLIITDYCMPGMTGYELLKKIKESSTFRETPVVIMSSENILTRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTREDRDGNEGRGINKRKLGEACDVSPSLSSSPPSISSSSSSWSAPSSPTSLDSPTRRLKTSTCD* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0906 221 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 184 IPR045279 GO:0009736
Vvi1g0906 221 Pfam Response regulator receiver domain 32 150 IPR001789 GO:0000160
Vvi1g0906 221 SMART REC_2 30 157 IPR001789 GO:0000160
Vvi1g0906 221 SUPERFAMILY CheY-like 30 153 IPR011006 -
Vvi1g0906 221 MobiDBLite consensus disorder prediction 181 221 - -
Vvi1g0906 221 CDD REC_typeA_ARR 32 153 - -
Vvi1g0906 221 MobiDBLite consensus disorder prediction 160 175 - -
Vvi1g0906 221 ProSiteProfiles Response regulatory domain profile. 31 158 IPR001789 GO:0000160
Vvi1g0906 221 MobiDBLite consensus disorder prediction 160 221 - -
Vvi1g0906 221 Gene3D - 29 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0906 Vvi-Chr1 9872347 9873499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0906 22 213 Response Regulator Gene Family AT1G59940 62.439 1.99e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi1g0906 Response_reg 1.3e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0906 K14492 - vvi:100263979 389.808