Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0897 ATGCAATGCATGTCGACAACCCATTTAGTTTACTATAAAAGGAAGAGAAGCAAAACAACAAAGCGGTACATCACCACTGCAAAATATACTTGTTTTCTCATTTCAACAAGGATGGAGAAAGATGGTTCTAGCCTCCTTTCTCCCATATCAGATGGAGAACATGGGGATTCTGCCGGAACCAGCGTTGAGAAGAAGCTTAGGTTATTTGGGTTTGAGCTTGATCCATATAAGAAAGGTGAGAGCTGCCTGAAGGAGTCTGTGGAAAGAGATGAAAGTGTAAATTCCTCAAACACAGATTCATCTGGGAGGGAAAAACCCTCTATAGAGAAGAACTCAACAGTAGAGCCAGAGGACAAGAAGTTTGAGTGCCAATATTGTTTCAAGGAATTTGCAAACTCGCAGGCATTGGGGGGTCATCAAAACGCCCACAAGAAGGAGAGAATGAAGAAGAAGAGGTTGCAGCTCCAAGCAAGGAAGGCTAGTATCAACCATTATCTTCAGCCCTTGCAGAACAACCATAGTTTCACTTACCATGGCTCAGCCCTATGGTTCTATGATCCCTCCTGCCAATCTCCCGACGATGAATCTCAGATTAGTTTCACTCCATTTGATCAAGATGCTCATCTCAAGAAGTCCCAGTTTTCCAAGTGGTATGCCCCCCCTGCTAACCTCCCACTTCAACAGGATACCTGTATGTTCACTCTCACACATCCTGATGGATCCGGACAGAACAAGCCTGCCATCATCAAGCCTTCCCCCTTGCCCGTTTCAAAGCAAAACTGTAAATCCTTGGATCTTCAGTTAGGACTCAGCGTGCAACCAAACATCAGGAGCTCCTCCAGAAGTGGGATATAG 855 0.4503 MQCMSTTHLVYYKRKRSKTTKRYITTAKYTCFLISTRMEKDGSSLLSPISDGEHGDSAGTSVEKKLRLFGFELDPYKKGESCLKESVERDESVNSSNTDSSGREKPSIEKNSTVEPEDKKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASINHYLQPLQNNHSFTYHGSALWFYDPSCQSPDDESQISFTPFDQDAHLKKSQFSKWYAPPANLPLQQDTCMFTLTHPDGSGQNKPAIIKPSPLPVSKQNCKSLDLQLGLSVQPNIRSSSRSGI* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0897 284 Gene3D Classic Zinc Finger 89 174 - -
Vvi1g0897 284 SUPERFAMILY beta-beta-alpha zinc fingers 118 148 IPR036236 -
Vvi1g0897 284 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Vvi1g0897 284 FunFam zinc finger protein 5 95 174 - -
Vvi1g0897 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Vvi1g0897 284 MobiDBLite consensus disorder prediction 84 115 - -
Vvi1g0897 284 PANTHER ZINC FINGER PROTEIN 5 60 272 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0897 Vvi-Chr1 9724651 9725505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0897 56 163 C2H2 Transcription Factor Family AT1G68360 40.496 3.40e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g0897 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0897 - - vvi:100854597 572.778