Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0895 ATGGCAATGCCTCTCCTCTTTATAGCACTAGCGTTGTCATTTCTTCCCCACACACAATCCAAGCTCAGCGCCGCTTACTACGACAAAACATGCCCTCTGTTCAAACCCATTATGCGGGAGATCATAAGCACCAAGCAAATCAACGACCCCACCACAGCTGCCGCCACTCTCCGCCTCTTCTTCCACGACTGCATGGTCGAAGGCTGCGACGCCTCCGTCCTCATCTCCTCCAACTCCTTCAACACCGCCGAGCGCGACGCCGACATCAACCTTTCCCTCCCAGGCGACTCCTTCGACCTCATCACCCGCGCCAAAATCGCCATCGAGGTCCAGTGTCCCGGCATTGTCTCCTGCGCCGACATCCTCGCCATCGCCACCCGTGATCTCATCGTCATGGTCGGCGGCCCCTACTACGAGGTTCGCCTCGGCAGAAAAGACGGCTTCATTTCTAAGGCGTCTCGAGTGGACGGCAACCTAGCCACATCTTCCATGTCTGTATCTGAAATGCTCTCTCTTTTCGAGTCCAAAGGATTCACAGCGCAAGAAATGGTGGCCTTGACTGGTGCACATACCATTGGCTTCTCCCACTGTAAGGAGTTCAGCCACCGGCTCTACAACTTCAGCAAAACTTCTGAGTTCGATCCAACCTACAACCCTAAATATGCAGAAGCCTTGAGAAAGCTCTGCGCAAAGTACACTTCGAACACAGCAATGGCGGCCTTCAACGATGTGGTGACGCCCAGCAAATTCGACAATATGTATTACTTAAATTTGAAAAGGGGGTTGGGGCTATTGAGTACGGACCACGCTCTGTATTTGGATTCCAGGACAAGGCCCTACGTAGATCTATATGCAGCGAACCAGACAGCCTTTTTTCAAGCCTTTGCTCATGCAATGGAGAAGGTGAGTGTTCATAAAATTAAAACTGGAAGGAAGGGAGAGGTCCGGCGCAGATGCGATTCTTTCAACAATATTAAGACTTCCTGA 987 0.5177 MAMPLLFIALALSFLPHTQSKLSAAYYDKTCPLFKPIMREIISTKQINDPTTAAATLRLFFHDCMVEGCDASVLISSNSFNTAERDADINLSLPGDSFDLITRAKIAIEVQCPGIVSCADILAIATRDLIVMVGGPYYEVRLGRKDGFISKASRVDGNLATSSMSVSEMLSLFESKGFTAQEMVALTGAHTIGFSHCKEFSHRLYNFSKTSEFDPTYNPKYAEALRKLCAKYTSNTAMAAFNDVVTPSKFDNMYYLNLKRGLGLLSTDHALYLDSRTRPYVDLYAANQTAFFQAFAHAMEKVSVHKIKTGRKGEVRRRCDSFNNIKTS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0895 328 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 SUPERFAMILY Heme-dependent peroxidases 22 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 ProSiteProfiles Plant heme peroxidase family profile. 21 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PANTHER - 5 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 Pfam Peroxidase 45 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Vvi1g0895 328 FunFam Peroxidase 25 169 - -
Vvi1g0895 328 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Vvi1g0895 328 Gene3D - 25 323 - -
Vvi1g0895 328 CDD secretory_peroxidase 21 322 IPR033905 GO:0004601|GO:0042744
Vvi1g0895 328 FunFam Peroxidase 160 302 - -
Vvi1g0895 328 Gene3D Peroxidase, domain 2 160 302 - -
Vvi1g0895 328 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g0895 328 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0895 Vvi-Chr1 9693927 9694913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0895 5 325 Peroxidase AT5G47000 59.190 1.54e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0895 K00430 - vvi:100258705 650.588