Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0881 ATGACTGTCCATCGCTGTGCTTCAATGCTACATTTCAGCAGATTATCTTCTCCTCCTAGACTTCTCTCCCCGTTTAAAAGTTGCTATTCATCCCTCCTCGATCGTTCATCATCAGCACCATCTTCTTCTTTGCGAATTGGCCTTTATTGGCTGGACTCACCACGCCGCCGACGAACTAGGGCGTTTGGAACCGCCTCCGCTGCCTCCCAAGATCGGAATGGAGCCGAAACGTTCTTTGCCGACCAAGGCGTTTCGTGGGCGTCCCTCGGAGTATCCGACCGGCTCACCCGTGCTCTTTCCACCATAGGCATCGAAAGACCGTCTTTGGTTCAGGCTGCTTGTATACCCTATATACTTTCAGGCAATGATGTGGTAGTTGCAGCAGAGACTGGTAGTGGTAAAACGCATGGCTACTTAGTTCCACTAATTGATAAACTATGTGGCACACCCAATGATTCTGTGGATGCTTCAACTGATCAAGAATCAAGACATCTGCATCAGCTTTGTCTTGTTCTTTGTCCAAATGTGATGCTCTGTGAGCAAGTAGTTCAAATGGCTAACTGCCTTTGTGGTGATAATGGTGAACCACTTCTACGAGTGGTAGCTGTATGTGGACGACAGGGATGGCCAGTTAAAGAACCAGATATTATTGTTTCAACACCAGCTGCTTTTCTGAATAATCTTAATGCAATTGACCCAGAAAAACAGCGTCGTTCCAATTTTCTGCGTGGTGTGAAATGTGTGGTGTTTGACGAAGCAGATATGCTTCTTTGTGGGAGCTTTCAGAATCAAGTCATCCGTCTCATAGATATGCTTCGTTTTGATGAAAAGATATTGTCTCGCATAAAAAAATCGGTACCTGATAAGCAAATGGAATTGGAATCTGATTCCATGTTGCATTTTTATTCTGAATCTGAAAAAGACGAGGAGGAAACAGAGGAGCAAACTGAAATCATCTCAGATGAGGAGGAAAATGTTGTAGGGGAACCTGTTGTTGAAGGTTTCACAGAGGAGATTGAAGTTGGGTCTATCAAGAAAAAAGATTGGAGGAGAGTGAGAAAAAATTATGAGCGTAGTAAACAGTACATTTTTGTTGCAGCTACCCTTCCAGTTAATGGAAAGAAAACTGCTGGGGGAGTCTTAAAACGGATGTTTCCAGATGCCCATTGGGTTAGTGGAGGCTACCTACATTGTCACAATCCCAGATTGGAGCAGAAGTGGATTGAAGTCACAGTTGATACACAGGTGGATGCTCTCATAGATGCTGTGAAACAAGGGTTTAGATCCAAAGTGTTAGATTCTGGTGTTGGTGTGAGTCGAACCATGGTGTTTGCAAACACTGTTGAGGCTGTTGAAGCAATCTCAAAGATATTACACAGGGCTGGGGTTGAATGTTTCCGTTACCATAGAGATAGCTCTTTGGAGGAGCGCGCGAAGACTTTGGTTGATTTTCAACAGAAAGGTGGTGTTCTTGTGTGCACTGATTCTGCTGCACGTGGCCTTGACATTCCTAATATTTCGCATGTGATTCAGGCAGACTTTGCAACTTCCGCTTTAGATTTCTTGCACAGGGTTGGTCGAACAGCTAGAGCTGGTCAGTTTGGGCTTGTCACTAGCCTGTATACGGAATCCAACAGGGATCTTGTTGCTGCAATTCGCCAAGCAGATAAACTGGGTCAACCAGTGGATGCAGCATTTAGCAGAAAAAGGAGCTTCAGGAACAAACTTAAGAAGAGAGGTACCAACAAATTGGGAGATGTTGAAGAGAGAGTTCTAGCATAA 1782 0.4456 MTVHRCASMLHFSRLSSPPRLLSPFKSCYSSLLDRSSSAPSSSLRIGLYWLDSPRRRRTRAFGTASAASQDRNGAETFFADQGVSWASLGVSDRLTRALSTIGIERPSLVQAACIPYILSGNDVVVAAETGSGKTHGYLVPLIDKLCGTPNDSVDASTDQESRHLHQLCLVLCPNVMLCEQVVQMANCLCGDNGEPLLRVVAVCGRQGWPVKEPDIIVSTPAAFLNNLNAIDPEKQRRSNFLRGVKCVVFDEADMLLCGSFQNQVIRLIDMLRFDEKILSRIKKSVPDKQMELESDSMLHFYSESEKDEEETEEQTEIISDEEENVVGEPVVEGFTEEIEVGSIKKKDWRRVRKNYERSKQYIFVAATLPVNGKKTAGGVLKRMFPDAHWVSGGYLHCHNPRLEQKWIEVTVDTQVDALIDAVKQGFRSKVLDSGVGVSRTMVFANTVEAVEAISKILHRAGVECFRYHRDSSLEERAKTLVDFQQKGGVLVCTDSAARGLDIPNISHVIQADFATSALDFLHRVGRTARAGQFGLVTSLYTESNRDLVAAIRQADKLGQPVDAAFSRKRSFRNKLKKRGTNKLGDVEERVLA* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0881 593 SMART ultradead3 103 406 IPR014001 -
Vvi1g0881 593 Gene3D - 404 592 IPR027417 -
Vvi1g0881 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 387 IPR014001 -
Vvi1g0881 593 Gene3D - 63 385 IPR027417 -
Vvi1g0881 593 CDD SF2_C_DEAD 403 541 - -
Vvi1g0881 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 580 IPR001650 -
Vvi1g0881 593 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 94 566 - -
Vvi1g0881 593 SMART helicmild6 452 532 IPR001650 -
Vvi1g0881 593 Pfam DEAD/DEAH box helicase 110 274 IPR011545 GO:0003676|GO:0005524
Vvi1g0881 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 544 IPR027417 -
Vvi1g0881 593 CDD DEADc 95 279 - -
Vvi1g0881 593 Pfam Helicase conserved C-terminal domain 439 532 IPR001650 -
Vvi1g0881 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 84 112 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0881 Vvi-Chr1 9410542 9423702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0881 346 554 Eukaryotic Initiation Factors Gene Family AT5G11200 23.750 8.32e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0881 - - vvi:100253463 1108.2