Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0876 ATGCCTTTTGGGTTGGTCACAGCATGGAATAAGCGCAGGAGAAGCAAGTCTCAGGATCACTCTGACCCTTGGATGTATAAACCTGTGGAGTACTGGCAGCTGGATGATCAAAATCCATCTACAAAAAGACGGCATGCATCATCAGTTTTCACGCTCAAGGAAATGGAAGAGGCAACATGCTCTTTCAGTGATGAGAAATTGGTGGGTAAAGGAGGATTTGGCCGAGTTTACAGAGGTACTCTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAACTGCCTCCATTTAAAGAGGCTGAAGGAGAACGCGAGTTCAGGGTAGAAGTTGATATCTTGAGCAGACTCGACCACCCAAATCTGGTTTCCTTGATAGGCTATTGTGCTGATGGAAAGCAGCGGTTTCTAGTTTATGAATACATGCACAATGGGAACCTACAAGATCATTTAAATGGAATCCAGGACACCAAGATGGATTGGCCTTTGAGGCTCAAAGTGGCCCTGGGAGCAGCAAGGGGACTTGCTTATCTCCATTCAAGTTCCAATGTTGGGATTCCCATTGTTCATAGAGATTTCAAGTCCACCAACATTCTTTTAAATTCCAACTTTGACGCTAAGATATCTGATTTTGGGCTTGCCAAGTTGATGCCGGAGGGCCAGGATAGCTATGTGACTGCCAGAGTACTTGGCACTTTTGGCTATTTTGATCCTGAATACACATCGACAGGGAAACTCACTTTACAAAGTGATGTTTATGCATTTGGAGTTGTACTACTTGAGCTTTTGACTGGACGACGAGCAGTGGACTTGAACCAGGGACCCAATGATCAAAACCTTGTACTACAGGTTAGGCATATATTGAATGATAGGAAGAAGTTGCGTAAGGTGATAGATCCAGAAATGGGTCGAAGTTCATACACAGTGGAGTCCATAGCAATGTTTGCAAACCTGGCTTCTAGATGTGTCCGTACAGAGAGTAGTGAGAGACCCTCAATGGCAGAATGTGTAAAGGAACTCCAACTGATTTTCTATACAAATACAAAAGGCTTGGGCATGCTCTAA 1062 0.4426 MPFGLVTAWNKRRRSKSQDHSDPWMYKPVEYWQLDDQNPSTKRRHASSVFTLKEMEEATCSFSDEKLVGKGGFGRVYRGTLRSGEVVAIKKMELPPFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKQRFLVYEYMHNGNLQDHLNGIQDTKMDWPLRLKVALGAARGLAYLHSSSNVGIPIVHRDFKSTNILLNSNFDAKISDFGLAKLMPEGQDSYVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPEMGRSSYTVESIAMFANLASRCVRTESSERPSMAECVKELQLIFYTNTKGLGML* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0876 353 PANTHER OS01G0750732 PROTEIN 39 344 - -
Vvi1g0876 353 ProSiteProfiles Protein kinase domain profile. 62 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0876 353 PIRSF ILK 33 349 - -
Vvi1g0876 353 CDD STKc_IRAK 68 342 - -
Vvi1g0876 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vvi1g0876 353 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Vvi1g0876 353 Gene3D Phosphorylase Kinase; domain 1 29 140 - -
Vvi1g0876 353 FunFam serine/threonine-protein kinase PBS1-like 30 140 - -
Vvi1g0876 353 SUPERFAMILY Protein kinase-like (PK-like) 48 344 IPR011009 -
Vvi1g0876 353 Gene3D Transferase(Phosphotransferase) domain 1 141 349 - -
Vvi1g0876 353 Pfam Protein kinase domain 63 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0876 353 FunFam receptor-like serine/threonine-protein kinase NCRK 141 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0876 Vvi-Chr1 9342575 9344861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0876 49 339 Receptor kinase-like Gene Family AT3G58690 46.959 1.15e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Vvi1g0876 Pkinase 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0876 - - vvi:100251958 712.605