Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0873 ATGGAGGTGCGAATGAGGCTATGGGAAGTAATACCATTTTCAGTGATGGTGTTGATGGAAGGTTGCACAGTGGGGCTGACAATTATGACCAAGACAGTGATGGCGAAGGGGATGAGCCAATTCGTCTTCGTGGTTTATTCCAATGCTCTTTCCTCTATCATTCTCCTTCCTTATTCCCTCATCTTTCGAAGGACGCAGCAGTCCTTCTTCACCTTCCCTCTCCTCACTAGATTTTTCTTCCTCGGGCTTACAGGGATAACCATAGCTCAGATTTTTGCCTTCACTGGCCTAAGCTACAGCTCACCCATTCTTGCATGTGGAATGGGCAACTTGATCCCTGCATTTTCTTTTGTGCTTGCTATTATTCTCAGGACAACAAAGCTGGATTGGCGAGTAACAAGTGGCCAAGCCAAAATCATTGGTACCTTTATATCCATCAGTGGAGGAACTCTAATGATTCTTTACAAGGGTCCACTTGTCAGGAAAACTGCATTTTCTGCACCTTTCCATCATCTCGAACTTATTCCTCGACATTTCATCTTCTCCTCAACACCAGAATATTGGGCTCTTGGAGGCATTTTGCTTGCAGTCGCTTCTTTATCTGCTTCAGTATGGGGCATAATCCAGGTGGGCACTGTCAAACAATATCCAGAACCGATAACCATAGCCGCTTTATATACTTCAATGGGGACAATCCAAAGTGCAATTGTGGCTTTTGTTGCAGAGAGAAATCTAAGTGCTTGGAAGTTGGAGCTCAACATGGAGCTCCTTCTCATTTTTCTATCAGCAATTTTTGGGAGTGCAATTCGTTGCAGTGTTCATATATGGTGCATGCACAACAAGGGCCCTTTTTATGTGCCCATGTTCAAGCCATTCGGGATTATCATTGCATCTATTGCTAGTGTAATCTTCTTTGGAGACAGTCTTCATTATGGAAGTGTAATAGGAGCTTACATAATTGGAATAGGGTATTATACTCTGATGTGGGGACAAATCAGAGAAGATGACATGAAGGCAGGTGGTGAAGGCATTGATTCTTCTGAGCAGAAGGTCCCTCTATTGCAAGAAGAGGAGCAAGTATAG 1083 0.4367 MEVRMRLWEVIPFSVMVLMEGCTVGLTIMTKTVMAKGMSQFVFVVYSNALSSIILLPYSLIFRRTQQSFFTFPLLTRFFFLGLTGITIAQIFAFTGLSYSSPILACGMGNLIPAFSFVLAIILRTTKLDWRVTSGQAKIIGTFISISGGTLMILYKGPLVRKTAFSAPFHHLELIPRHFIFSSTPEYWALGGILLAVASLSASVWGIIQVGTVKQYPEPITIAALYTSMGTIQSAIVAFVAERNLSAWKLELNMELLLIFLSAIFGSAIRCSVHIWCMHNKGPFYVPMFKPFGIIIASIASVIFFGDSLHYGSVIGAYIIGIGYYTLMWGQIREDDMKAGGEGIDSSEQKVPLLQEEEQV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0873 360 PANTHER WAT1-RELATED PROTEIN 12 335 IPR030184 GO:0016020|GO:0022857
Vvi1g0873 360 Pfam EamA-like transporter family 17 146 IPR000620 GO:0016020
Vvi1g0873 360 Pfam EamA-like transporter family 191 327 IPR000620 GO:0016020
Vvi1g0873 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0873 Vvi-Chr1 9309061 9312724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0873 1 359 Nodulin-like Gene Family AT1G70260 48.925 1.32e-127 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0873 - - vvi:104879964 655.981