Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0872 ATGCTCAACCTCGTCCCAGGTTTTACCTTCATACTTGCCATCATTTTCAGGATGGAAAGACTAGATTGGAGAGGCAGTAGCATGGCAAAATCCATGGGAACTGTAGTGTCAATTGCTGGGGCATTCATCGTGACTTTCTACAAGGGTTCTCCAATTCTGATGACACCCTCACCTTCCAACTTTCCTGATCAACTTTTTCTCTCACAACAATCAAACTGGGTCTTTGGAGGATTGCTCCTTGCTGCTGATTGTGTGATGTCCTCAGCATGGCTTATTCTACAGGCATCAATTCTGAAGAAATACCCAGCAGAGCTGATTATAAACTTTTATTACTGCTTCTTTGTTGCCATTCAATCTGCGGCAGCCTCTCTGATTATGGAAAGAGGCCCAGGTGCTTGGAGCTTAAAACCTAGTACAAGGTTCATTGCTGTGATGTACTCAGGAGTGTTTGGCTATGTGTTTCAAGTTGGCGCTATTACATGGTGTGTTCACCAGAAAGGACCTGTCTTTGTTGCCATGTTCAAGCCAGTGGGTATTGTTGTTGCAGTTGCCATGGGTGTTATCTTCTTAGGAGATACTTTCTATATGGGAAGTTTGATTGGAGCAACTGTAATTGTTATTGGGTTTTATTCTGTGATGTGGGGAAAAGCCAAGGAAGAGAAGATTGATGAGGACATTGGGATGAGGAGCTTGGAATCAACTAGCCAGAAGGCCCCTCTCTTGCAGAACTATATTGAAGGTCCCTCACTTCCCAAACAAAATTGA 765 0.4366 MLNLVPGFTFILAIIFRMERLDWRGSSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGGLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKPSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYMGSLIGATVIVIGFYSVMWGKAKEEKIDEDIGMRSLESTSQKAPLLQNYIEGPSLPKQN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0872 254 SUPERFAMILY Multidrug resistance efflux transporter EmrE 136 218 - -
Vvi1g0872 254 Pfam EamA-like transporter family 76 213 IPR000620 GO:0016020
Vvi1g0872 254 PANTHER WAT1-RELATED PROTEIN 1 230 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0872 Vvi-Chr1 9302997 9306029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0872 3 244 Nodulin-like Gene Family AT3G28050 47.266 9.91e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0872 - - vvi:100248371 499.975