Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0871 ATGGGAGTGATGGGAACTGTTTCACTGCCTTTTCTGGGAATGGTGATTGTGGTGTTTACTCAAGTTACCAACATGATAGTGAGCAAAATGGCTATGTCCAATGGCCTGAGCTCATTCGTCCTTGTTCTCTACTCTAACGCCATCTCTGCCGTCATCCTTCTCCCCCTTTCCCTTCTCTTCCACAGGTCTCCAAGGCCTCCGCTGACCTTCTCCATTCTCTGCAGATTCTTCTTGCTCGCCCTGATTGGATGTTTTGCTCAAATATTTGGATATGCTGGTGTCCAGTACAGTTCTCCTACACTTGGCTCAGCAATGCTGAACCTCGTTCCAGCCTTCACCTTCATACTTGCCGTCATTTGCAGGATGGAAAAACTAGAATTGAAAAAATCAAGTAGCCTAGCTAAATCAGTGGGAGCCTTGGTATCAGTTGCAGGGGCATTTGTTGTGACATTCTACAAGGGCCCACCAATCATGTTCTCATCCTCATTTTCTGACTCATCTAACCAAATTTTCTCATCCCAATCACATTGGGTCCTTGGAGGATTTCTTCTTGCTGATGAATCTTTGTTGGCTTCAATGTGGTACATTTTGCAGGCCACGATCCTAAAGAAACACCCAGCAGTGCTGACCATAACCTTTTTCTACTGCTTCTTTATTTCTATCATATCTTTGGCAATTTCTCTTGTTGCAGAACGAGACCCTAGCGCTTGGAGGTTAAAACTTGATGTGGGGTTGCTTGCTGTCTTATATTCCGCAATTGTTGGAAATGTAATCCGCATTAGCATGTGTACATGGTGCGTGCGGAGGGCCGGACCCCTCTTTTGTTCCATGTTCAAGCCCTTAGGGATAGTATTCGCTTTTGTCATGGGCGTCATCTTTTCAGGGGATGCTCTTCATCTTGGAAGTTTGGTGGGAGCAATTATAATTGTAACTGGATTTTATGCTGTGATGTGGGGAAAGGCAAAAGAGGCAGAAGAAGGTAGGTTAGAATGCAGCCGAAAGGTCCCTCTCTTGCAAAACCAGACAGATGTATCCGTATAG 1041 0.4524 MGVMGTVSLPFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLSLLFHRSPRPPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILAVICRMEKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQIFSSQSHWVLGGFLLADESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSAWRLKLDVGLLAVLYSAIVGNVIRISMCTWCVRRAGPLFCSMFKPLGIVFAFVMGVIFSGDALHLGSLVGAIIIVTGFYAVMWGKAKEAEEGRLECSRKVPLLQNQTDVSV* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0871 346 PANTHER WAT1-RELATED PROTEIN 9 324 IPR030184 GO:0016020|GO:0022857
Vvi1g0871 346 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 153 - -
Vvi1g0871 346 Pfam EamA-like transporter family 12 150 IPR000620 GO:0016020
Vvi1g0871 346 Pfam EamA-like transporter family 189 317 IPR000620 GO:0016020
Vvi1g0871 346 SUPERFAMILY Multidrug resistance efflux transporter EmrE 216 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0871 Vvi-Chr1 9295425 9299394 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0871 9 341 Nodulin-like Gene Family AT5G40240 43.235 2.51e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0871 - - vvi:100262193 621.313