Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0869 ATGTGGAGTTTTAAACTTATGCTAGTGATGTTAGTAATAGAGTCGTTGGAGATGGGCCTAAATACCATAAGCAAAGCAGCCATGAGTAGAGGGATGAGCAACTTCGTCTTTGTTGTTTACTCTAACACCTTTGCCATTCCCTTCCTTCTTCTTTCATGCCTTCTCTTTCACAGAAGAAAAACCCCTCCTCCACTCACCACTTCCATCCTCTGCAGAATCTTTGTTCTTGGCCTCATCAGTTGTTCAATACAGATGTTTATGTATGTTGGAATAAGGTATAGCTCTCCAACCTTAGCCTCAGCCATGACTGATCTGGTCCCTGCTTTTACCTTCATACTTGCCATCATTACCAGGTATGTGCACATCTACCTCTCCTTTATTTTCAGTTTGAGGCTCTTTTCAACGAGGGCACCCTCATAA 420 0.4262 MWSFKLMLVMLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLLSCLLFHRRKTPPPLTTSILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRYVHIYLSFIFSLRLFSTRAPS* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0869 139 Pfam EamA-like transporter family 9 117 IPR000620 GO:0016020
Vvi1g0869 139 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 116 - -
Vvi1g0869 139 PANTHER WAT1-RELATED PROTEIN 7 119 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0869 Vvi-Chr1 9257531 9258121 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0869 10 118 Nodulin-like Gene Family AT3G28050 48.624 1.17e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0869 - - vvi:100253486 234.958