Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0857 ATGGGAGGGCTTGTTGATTCAGAAGGGGTTGAGAGACTTGTGCAACTCATGCAGCCTGAGAGAGCTGAGAAGAAAATAGACTTGATTGGTCGTTCAATTCTTGCAGGTGTTATAGCTGCCACAGAGGAGTATGATTGCCTTGGTCGATTTGTCCAGCTCAGGGGCTTGCCTGTATTGGATGAATGGCTCCAAGAGATACATAAAGGAAAGATTGGTGATGGTAGTAGCCCCAAGGATAGTGATAAATCTGTTGAGGAATTCCTATTGGTTTTACTTCGAGCACTCGATAAGCGGCCTGCGAATCTTCAAGCCCTTCAAATGTGTAACATTGGCAAATCTGTTAATCATTTACGTAGTCATAAAAACTAA 369 0.4336 MGGLVDSEGVERLVQLMQPERAEKKIDLIGRSILAGVIAATEEYDCLGRFVQLRGLPVLDEWLQEIHKGKIGDGSSPKDSDKSVEEFLLVLLRALDKRPANLQALQMCNIGKSVNHLRSHKN* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0857 122 ProSiteProfiles TFIIS N-terminal domain profile. 57 122 IPR017923 -
Vvi1g0857 122 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 2 122 - -
Vvi1g0857 122 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 45 121 IPR035441 -
Vvi1g0857 122 SMART TFS2_5 63 122 IPR003617 GO:0005634
Vvi1g0857 122 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 7 122 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0857 Vvi-Chr1 9164169 9164537 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi1g0857 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0857 - - vvi:100248456 221.476