Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0849 ATGGTTTTTTCAGCATACCCATTCCAGAAAATGACTTTGATTCAATCTCAAATCAAGCAAAAAGATGGTCTCTTGATCCACTCTCCTCTTTCTCCTCTGCTTTATTCCTCTTCCTCCCCTTCGGCTTTATCTTCCTATGATAGTAATTACCAGAAAGAATCAACCCCATCACCATCATCTGGTAGCAGAATAAGCCCAGCTGTGCTTTTCATCATAGTTATTCTAGCTGTTATATTTTTCATCTCTGGTCTCCTCCACTTGCTTGTTAGATTTCTCGTAAAGCATAGATCTTCTTCATCAATCTCTCAATCTAACAGATACCAGGAAACGTCTAGCTCTCATGCTTTCCAAAGACAGTTACAACAACTCTTCCATCTTCATGACTCAGGGCTAGATCAAGCTTTTATAGATGCTCTCCCCGTGTTCCTTTACAAAGATATAGTGGGTCTAAAAGAGCCATTTGATTGTGCTGTTTGCCTTTGTGAGTTCTCACAAGAAGATAAATTGAGATTGCTTCCCATGTGTAGTCATGCTTTTCACATTGAGTGCATAGACACATGGCTGTTATCAAATTCAACTTGCCCTCTTTGTAGAGGAACCCTCTTCAATCCTGGGCTTGCCATGGAAAACTCAGTATTTGATTTTGAAGATTCAAGGGAAGAAGGTGGCCTTTCAAGCAATGGAGATGGGGTTTCTTCTGCACAAAAACCACCTGAGGATGATATTGCTAGTGAAAAAAGGGTTTTTTCCGTGAGACTAGGCAAATTTAGAGGCTTAAATGGTGGTGGTGGTGGAGGAGGAGAAGGAGAAGGAGAAGGAGAGAGAGGAGGGGGTGAGACAAGCTGTAGTAATTTGGATGCAAGGAGATGTTTCTCGATGGGTTCGTTCCAATATGTGGTTGCTAATTCGGACCTGCAGGTGGCCTTGTGCCCCAACAGAGCCGATGCTGGCAGTGATGCAGTTGTGAAGCTGATGAAAGGGAGAGGTGGGCACACTGGGAATTCCTCAACTGATGGCGATGTTGAAGGGAAGAAGATTAGCATTGGAAGCAAAGACGAAAGTTTTTCTGTTTCCAAAATCTGGCTCTGGCCTAAGAAGGGTAAATTTCCAAGTTCATCAGATACCCATATTGCTTTTACTTTTCTCTTTGCTTTAAATTTCTTTGGTGCCAAGCTCTGTGATTATGATTCTTTCGTATTAAACTTTATGGCAAATGGGTGCAATGTACTTCTATCTTTTCAGTTATTTTCTACACACTTGTAA 1263 0.4165 MVFSAYPFQKMTLIQSQIKQKDGLLIHSPLSPLLYSSSSPSALSSYDSNYQKESTPSPSSGSRISPAVLFIIVILAVIFFISGLLHLLVRFLVKHRSSSSISQSNRYQETSSSHAFQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIVGLKEPFDCAVCLCEFSQEDKLRLLPMCSHAFHIECIDTWLLSNSTCPLCRGTLFNPGLAMENSVFDFEDSREEGGLSSNGDGVSSAQKPPEDDIASEKRVFSVRLGKFRGLNGGGGGGGEGEGEGERGGGETSCSNLDARRCFSMGSFQYVVANSDLQVALCPNRADAGSDAVVKLMKGRGGHTGNSSTDGDVEGKKISIGSKDESFSVSKIWLWPKKGKFPSSSDTHIAFTFLFALNFFGAKLCDYDSFVLNFMANGCNVLLSFQLFSTHL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0849 420 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Vvi1g0849 420 SUPERFAMILY RING/U-box 135 203 - -
Vvi1g0849 420 Pfam Ring finger domain 155 198 IPR001841 -
Vvi1g0849 420 CDD RING-H2_EL5-like 155 198 - -
Vvi1g0849 420 FunFam RING-H2 finger protein ATL46 118 203 - -
Vvi1g0849 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 58 361 - -
Vvi1g0849 420 MobiDBLite consensus disorder prediction 259 280 - -
Vvi1g0849 420 SMART ring_2 156 197 IPR001841 -
Vvi1g0849 420 MobiDBLite consensus disorder prediction 218 242 - -
Vvi1g0849 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 203 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0849 Vvi-Chr1 8988327 8989738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0849 61 368 C3H Transcription Factor Family AT2G18650 43.027 2.79e-60 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0849 - - vvi:100253470 651.358