Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0847 ATGGCCTCAAGATCATGTGCAAATTTTTTGGACTTGGCTTCTGGAAGCCTGCTGGATATCCCTCATACTCCTAGACCTCTTCCACGGGTGATGACTGTTCCTGGAATCATCTCTGACTTGGATGGATATGGCAGTAATGATGGGGATTCTGATGTTTGTCATGAGCGGAAAATTATAGTGGCAAATATGCTGCCTTTGCATGCTCAAAGGGATAAAGTGACTGCCAAATGGTGCTTTAGTTTAGATGAAGATGCTCTTCTATTGCATTTAAAGGATGGTTTCTCCCCTGAAACAGAGGTTATTTATGTGGGGTCTCTCAAGGTTGAAATAGATGCAAGTGAACAGGAAGAAGTTGCACAGAAACTGCTGGAGGATTTCAATTGTGTACCAACATTTTTACCTCATGACCTGCATAAAAAGTTTTATCATGGGTTCTGTAAACAGCAACTGTGGCCTCTTTTTCATTACATGTTGCCCATGTGCCCCGACCATGGCGATCGCTTTGATCGCGTGCTTTGGCAGGCCTATGTTTCTGCTAATAAGATATTTGCAGACAAGGTCAGAGAAGTGATCAATCCTGATGATGATTATGTTTGGGTTCAGGATTATCACTTGATGGTTCTCCCTACATTCTTAAGGAAGCGCTTCCATCGTGTCAAGCTTGGGTTCTTCCTGCACAGTCCATTCCCCTCATCAGAAATATACAGAACCCTACCAGTTAGAGATGAAATTCTCCGAGGATTGCTGAATTGTGATCTAATTGGCTTTCAGACATTTGATTATGCTCGCCACTTCCTGTCCTGCTGCAGTAGAATGCTGGGTCTGGACTACGAATCTAAGCGGGGACACATTGGACTTGATTACTCGGGTCGGACTGTGTATATCAAAATTCTGCCTGTTGGGGTTCATATGGGTAGACTTGAATCTGTACTGAATCTTCACTCTACATCTGCCAAAATCAAAGAAATTCAAAAACAGTTTGAAGGGAAAAAATTGATTCTTGGTGTGGATGACATGGATATATTTAAAGGTATTAGTCTGAAATTTCTTGCTGTAGAACAGCTCTTACAACAGCACCCAGAGTTGCAAGGAAAACTAGTACTGGTTCAAATTGTGAATCCGGCAAGGAGCACAGGGAAAGATGTCCAGGAAGCAAAAAGAGAGACATATTTAACTGCTGAAAGGATCAATGAAACTTATGGTTCCCCAAATTATGAGCCGGTGATTCTCATTGATCGTCCTGTTGCTCGCTATGAGAAGTCTGCCTATTATGCTGTGGCAGAATGTTGCATAGTGAATGCTGTAAGGGATGGAATGAACTTAGTTCCTTACAAGTATATTGTCTGCAGGCAGGGAACTCCACATATGGATAAAGAAACAGGCATGAACTTGGTTTCTCCTCCCACCAGCATGCTTGTTGTCTCTGAGTTTATAGGTTGCTCACCTTCTTTAAGTGGAGCAATTAGGGTTAACCCATGGGATACTGATGCTGTGGCTGAAGCCTTAAATTTGGCAATTACCATGCCCAATTCTGAAAAGCAGTTGCGTCATGAGAAGCACTATCGATATGTTAGCTCTCATGATGTGGCCTACTGGGCACGCAGCTTTATGCATGATCTTGACAGAGCATGCAAGGATCATTATAGCAAACGGTGTTGGGGAATTGGTTTGGGACTGGGTTTCAGAGTTGTTTCGCTTTCCCCAAGTTTTAGGAAATTGTCTATTGACCATATAGTCTCAACCTATAAGAGGACAACTAGAAGGGCAATATTTCTGGATTATGATGGGACTGTTGTACCACAATCTTCTATTATTAAATCCCCCAGCCCTGAAGTTATATCTGTTCTGAGTACTTTATGCAGTGATCCTAAGAACACTGTATTTATTGTTAGTGGCAGGGGAAGGAGTTCACTGAGTGAGTGGCTTGCCCCATGTGAAAGGTTGGGAATAGCAGCTGAGCATGGGTACTTTATGAGGTGGAATGAGTCCACCAAGTGGGAAAGTTGTAACTTGGCTGCCGACCTTGACTGGAAAAAAGTTGTGGAGCCTGTGATGAGATTATATACTGAGACGACTGATGGCTCCAACATAGAGATTAAAGAGAGTGCTTTAGTATGGCACCATCAGGACGCAGACCCAGATTTTGGATCCTGCCAAGCAAAAGAATTGATGGATCATTTGGAAAATGTACTTGCAAATGAGCCAGCAGTTGTGAAAAGGGGCCAGCATATCGTTGAAGTTAAACCACAGGGAGTGAGCAAGGGGTTGGTGGCAGAGAAGGTTCTCTCAACAATGGTCAATGATGGAAAGCCTCCAGATTTTGTAATGTGCATTGGAGATGATAGATCTGATGAAGACATGTTTGAGGGAATATTCAGGACGATATCTAGCCCGTCTCTGTCTATGAGTCCAGAGATCTTTGCCTGCACTGTGGGACAAAAGCCGAGCAAGGCCAAGTACTATCTTGATGATACTACTGATGTTGTGAGATTGCTTCAAGGCCTAGCTACTGCTTCAAATCCAAAGCCTAGTGGAAGCTTGTTGCGGATATGA 2553 0.432 MASRSCANFLDLASGSLLDIPHTPRPLPRVMTVPGIISDLDGYGSNDGDSDVCHERKIIVANMLPLHAQRDKVTAKWCFSLDEDALLLHLKDGFSPETEVIYVGSLKVEIDASEQEEVAQKLLEDFNCVPTFLPHDLHKKFYHGFCKQQLWPLFHYMLPMCPDHGDRFDRVLWQAYVSANKIFADKVREVINPDDDYVWVQDYHLMVLPTFLRKRFHRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLIGFQTFDYARHFLSCCSRMLGLDYESKRGHIGLDYSGRTVYIKILPVGVHMGRLESVLNLHSTSAKIKEIQKQFEGKKLILGVDDMDIFKGISLKFLAVEQLLQQHPELQGKLVLVQIVNPARSTGKDVQEAKRETYLTAERINETYGSPNYEPVILIDRPVARYEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTPHMDKETGMNLVSPPTSMLVVSEFIGCSPSLSGAIRVNPWDTDAVAEALNLAITMPNSEKQLRHEKHYRYVSSHDVAYWARSFMHDLDRACKDHYSKRCWGIGLGLGFRVVSLSPSFRKLSIDHIVSTYKRTTRRAIFLDYDGTVVPQSSIIKSPSPEVISVLSTLCSDPKNTVFIVSGRGRSSLSEWLAPCERLGIAAEHGYFMRWNESTKWESCNLAADLDWKKVVEPVMRLYTETTDGSNIEIKESALVWHHQDADPDFGSCQAKELMDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSTMVNDGKPPDFVMCIGDDRSDEDMFEGIFRTISSPSLSMSPEIFACTVGQKPSKAKYYLDDTTDVVRLLQGLATASNPKPSGSLLRI* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0847 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 49 308 - -
Vvi1g0847 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 56 545 - -
Vvi1g0847 850 Pfam Trehalose-phosphatase 591 825 IPR003337 GO:0003824|GO:0005992
Vvi1g0847 850 Gene3D Glycogen Phosphorylase B; 309 525 - -
Vvi1g0847 850 Pfam Glycosyltransferase family 20 56 541 IPR001830 GO:0003824|GO:0005992
Vvi1g0847 850 NCBIfam trehalose-phosphatase 586 836 IPR003337 GO:0003824|GO:0005992
Vvi1g0847 850 Gene3D Glycogen Phosphorylase B; 49 308 - -
Vvi1g0847 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 587 704 - -
Vvi1g0847 850 SUPERFAMILY HAD-like 588 836 IPR036412 -
Vvi1g0847 850 CDD GT20_TPS 56 540 IPR001830 GO:0003824|GO:0005992
Vvi1g0847 850 FunFam Alpha,alpha-trehalose-phosphate synthase 310 525 - -
Vvi1g0847 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 837 IPR001830 GO:0003824|GO:0005992
Vvi1g0847 850 Gene3D - 717 844 IPR023214 -
Vvi1g0847 850 Gene3D - 587 705 IPR023214 -
Vvi1g0847 850 CDD HAD_TPP 589 830 - -
Vvi1g0847 850 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 717 846 - -
Vvi1g0847 850 NCBIfam HAD-IIB family hydrolase 589 789 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0847 Vvi-Chr1 8958843 8961741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0847 1 843 Trehalose Biosynthesis Gene Families AT1G60140 75.797 0.0 1375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0847 K16055 - vvi:100246842 1728.76