Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0844 ATGTCTCGAGTTTATGTTGGGAATTTGGATCCTCGTGTCTCAGAAAGGGAGCTTGAAGATGAATTTCGAGTTTACGGTGTTATTCGGAGTGTTTGGGTTGCTCGGAGACCACCGGGTTATGCTTTTGTTGAGTTTGCTGATCGTAGGGATGCTGTAGATGCAATTCGTGGATTGGATGGAAAGAGTGGGTGGCGTGTGGAGCTCTCTCATAATTCTAAGGGGGGTGGTGGTGGTGGTGGTGGTGGTGGAGGCCGTGATCGTGGACGTGGCGGAGGTGAGGACTTGAAGTGCTATGAATGTGGTGAACCTGGTCATTTTGCTCGAGAATGTCGCTTGCGGATTGGTTCACGAGGCATGGGAAGTGGACGGCGTCGAAGCATTAGCCCTCGTCCTCGTAGGAGTCCAAGTTATGGGCGCAGCCCGCATGCGAGAAAATCTCCACGACGTAGAAGCGTATCACCTCGTCGAGGTCGCAGCTACAGCAGGTCACCTCCATATCGCCGTGCTCGCAATGATTCACCTTTTGCTAATGGAGACTGA 540 0.5241 MSRVYVGNLDPRVSERELEDEFRVYGVIRSVWVARRPPGYAFVEFADRRDAVDAIRGLDGKSGWRVELSHNSKGGGGGGGGGGGRDRGRGGGEDLKCYECGEPGHFARECRLRIGSRGMGSGRRRSISPRPRRSPSYGRSPHARKSPRRRSVSPRRGRSYSRSPPYRRARNDSPFANGD* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0844 179 CDD RRM_SRSF3_like 3 71 - -
Vvi1g0844 179 MobiDBLite consensus disorder prediction 67 96 - -
Vvi1g0844 179 ProSiteProfiles Zinc finger CCHC-type profile. 96 111 IPR001878 GO:0003676|GO:0008270
Vvi1g0844 179 MobiDBLite consensus disorder prediction 137 156 - -
Vvi1g0844 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Vvi1g0844 179 SMART c2hcfinal6 96 112 IPR001878 GO:0003676|GO:0008270
Vvi1g0844 179 Pfam Zinc knuckle 96 111 IPR001878 GO:0003676|GO:0008270
Vvi1g0844 179 Gene3D - 1 94 IPR012677 -
Vvi1g0844 179 SUPERFAMILY Retrovirus zinc finger-like domains 89 113 IPR036875 GO:0003676|GO:0008270
Vvi1g0844 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Vvi1g0844 179 Gene3D - 95 155 - -
Vvi1g0844 179 SMART rrm1_1 3 69 IPR000504 GO:0003723
Vvi1g0844 179 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 168 - -
Vvi1g0844 179 MobiDBLite consensus disorder prediction 117 179 - -
Vvi1g0844 179 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Vvi1g0844 179 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0844 Vvi-Chr1 8907771 8916677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0844 2 59 Eukaryotic Initiation Factors Gene Family AT1G71770 40.323 1.81e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0844 K12896 - vvi:100251981 261.922