Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0840 ATGACTATTCCTAGGATCTCATCGCTGCTCTCTCGCTCTTTCACTTCTTCTGCTTCTTCTGCTTTGCTTTCTTCCATAGGGAGGAATTCATCCCGGAGGGGCGGGATCTTTAGATATAGCACTGCTGCAGTTGTTGAAGAACCAATCAATCCTTCTGTTAATGTCAATTATACTCAGCTTTTAATCAATGGACAATTTGTGGATGCCGCAACGGGGAAAACTTTTGAGACATTGGACCCCAGGACAGGGAATGTGATTGCCAGTGTTGCTGAAGGTGACGCAGAAGATGTTAATCGAGCTGTCTCGGCTGCTCGCAAGGCGTTTGATGAGGGACCATGGCCTAGGATGAGTCCTTATGAGAGATCCAAGATACTCTTGCGTTTTGCTGATTTGCTTGAAAAGCACAATGATGAGATTGCAGCACTCGAGACTTGGGATAATGGGAAACCATTTGAACAGGCTGCAAAGGCTGAAGTACCATTGGTGATACGTTTGATGCGGTACTATGCGGGTTGGGCAGATAAGATTCATGGTCTCACGGTTCCTGCTGATGGATTGCATCAAGTGCAAACCTTGCATGAACCCATTGGCGTTGCTGGACAGATTATCCCCTGGAATTTCCCACTTCTCATGTATGCTTGGAAGATTGGACCTGCATTAGCATGTGGTAACACTATCGTTCTAAAGACAGCAGAGCAGACACCATTGTCTGCTTTATATGCATCGAAGTTATTGCATGAGGCCGGGCTTCCTCCAGGTGTTCTAAATGTGGTTTCTGGTTATGGTCCAACTGCTGGTGCAGCACTTGCCAGCCATATGGATGTGGACAAGCTTGCTTTCACTGGATCAACTGCAACTGGAAAAATTGTACTTCAATTGGCTGCAAGGAGCAATCTTAAGCCAGTGACTTTAGAGCTTGGAGGGAAATCCCCTTTCATTGTGTGTGAGGATGCTAATGTAGATGAGGCTGTTGAGCTAGCCCACTTTGCTTTATTCTTTAATCAGGGGCAATGTTGTTGTGCTGGCTCCCGTACATTTGTACATGAAAGTATATACGATGAGTTTGTAGAGAAGGCGAAAGCACGTGCTTTAAGACGCACCGTTGGTGATCCATTCAAGGCAGGCATTGAGCAAGGCCCCCAGATTGATTCAGATCAATTTGAGAAGATCCTGAGATACATAAGATCTGGTGTCGAAAATGGAGCCACCCTTGAAACCGGAGGTGAGAGATTTGGCAAAGAGGGCTTCTTCATTAAGCCTACAGTTTTCTCTAATGTTCAGGACGGCATGTTGATAGCACAGGACGAGATATTTGGACCAGTGCAGTCCATCCTGAAATTCAAGGACCTTGGTGAGGTGATAAGAAGGGCAAACGCCACTAGTTATGGGCTGGCCGCAGGAGTCTTTACCCAGAACTTAGACACAGCCAACACCTTGACCCGCGCACTAAAGGTGGGCACAGTATGGATTAACTGCTTTGATGTGTTTGATGCAGCGATTCCTTTTGGTGGGTACAAGATGAGTGGGCATGGCAGAGAAAAGGGTATTTACAGTCTTCAAAACTACCTGCAAGTGAAGGCTGTTATTACTCCCTTGAAGAACCCCGCGTGGTTATAA 1617 0.4632 MTIPRISSLLSRSFTSSASSALLSSIGRNSSRRGGIFRYSTAAVVEEPINPSVNVNYTQLLINGQFVDAATGKTFETLDPRTGNVIASVAEGDAEDVNRAVSAARKAFDEGPWPRMSPYERSKILLRFADLLEKHNDEIAALETWDNGKPFEQAAKAEVPLVIRLMRYYAGWADKIHGLTVPADGLHQVQTLHEPIGVAGQIIPWNFPLLMYAWKIGPALACGNTIVLKTAEQTPLSALYASKLLHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTATGKIVLQLAARSNLKPVTLELGGKSPFIVCEDANVDEAVELAHFALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALRRTVGDPFKAGIEQGPQIDSDQFEKILRYIRSGVENGATLETGGERFGKEGFFIKPTVFSNVQDGMLIAQDEIFGPVQSILKFKDLGEVIRRANATSYGLAAGVFTQNLDTANTLTRALKVGTVWINCFDVFDAAIPFGGYKMSGHGREKGIYSLQNYLQVKAVITPLKNPAWL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0840 538 FunFam Aldehyde dehydrogenase, putative 500 526 - -
Vvi1g0840 538 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 44 528 - -
Vvi1g0840 538 FunFam Mitochondrial aldehyde dehydrogenase 2 310 499 - -
Vvi1g0840 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 526 IPR016162 GO:0016491
Vvi1g0840 538 Pfam Aldehyde dehydrogenase family 67 528 IPR015590 GO:0016491
Vvi1g0840 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 332 343 IPR016160 GO:0016491
Vvi1g0840 538 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 62 331 - -
Vvi1g0840 538 CDD ALDH_F2BC 55 530 - -
Vvi1g0840 538 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 304 311 IPR029510 GO:0016491
Vvi1g0840 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 497 IPR016163 GO:0016620
Vvi1g0840 538 SUPERFAMILY ALDH-like 54 532 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0840 Vvi-Chr1 8860974 8865393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0840 1 538 Aldehyde Dehydrogenase Gene Family AT3G48000 76.623 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0840 K00128 - vvi:100267386 1045.8