Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0839 ATGTATGCTTGGAAGATTGGACCTGCATTAGCATGTGGTAACACTGTGGTTCTAAAGACAGCAGAGCAAACACCATTGTCTGCTCTATACGTGTCCAAGTTATTTCACGAGGTTGCTTTCACTGGATCAACTAAGACCGGAGAAGCTATACTTCAATCGGCTGCAATGAGCAATCTTAAGCCAGTGACTTTAGAGCTTGGAGGCAAATCCCCTTTCATTGTGTGTGAGGATGCTAATGTGGATGAGGCTGTTGAGATGGCCCACTTTGCTTTATTCTTTAATCAGGGGCAATGCTGTGCTTCTGGCTCTCGCACATTTGTACATGAAAGTGTATATGACGAGTTTGTAGAGAAGGCAAAAGCACGTGCTTTAAGACGTACTGTTGGTGATCCATTCAAGGCAGGTATTGAGCAAGGACCCCAGATTGATTCAAAGCAGTTTGAGAAGATCATGAGATACATAAGGTCCGGTGTTGAAAGTGGAGCTACCCTTGAGAGTGGAGGTGAGAGATTTGGCAAGGAGAGATCTCGGGTAATGTGGCGTTTTGCCGATTTGCTTGAAGATCACAACGATCAAATTGCAGCACTTGAGACTTGGGATAATGGGAAGCCATATGAACAGGCTGCCAAAGTTGAATTTCTTGAAACTTGGAAAAGTTTTCTGTATACAAATTCCTCAGGTTGGGCAGATAAAATTCATGGTCTCACAATTCCTGCTGACGGACTGCACCATGTACAAACATTGCATGAGCCAATTGGTGTAGCGGGGCAGATCATTCCCTGGAATTTCCCACTTCTCATGTACGCTTGGAAGGTCGGGCCTGCATTAGCATGTGGGAACACTGTTATTCTAAAGACTGCAGAACAGACACCATTGTCTGCGCTCCATGCTGGACTTCCACCAGGTGTTCTAAATGTGGTTTCTGGTTATGGTCCAACTGCTGGTGCTGCCCTTGCCAGTCATATGGATGTCAATAAGCTTGCTTTCACTGGATCAACTGAAACTGGGAAAATTGTAATTCAGTTGGCTGAAAAAAGCAATCTTAAGCCAGTGACTCTAGAGCTTGGGGGCAAATCCCCTTTCATTGTGTGTGAGGATGCTAATGTAGATGAGGCTGTGGAGCTGGCACATTTTTCTCTGTTCTTTAATCAAGGGCAATGCTGTTGTGCAGGTTCTCATACTTATGTACATGAACGTATATATGATGAATTTGTAGAGAAGGCTAAAGCACGAGCTTTGAAACGCGTTGTTGGTGATCCATTCAAGGCAGGCACTGAGCAAGGCCCACAGATTGATTCAGAGAAATTTGAGAAGATCCTGAGATACATAAGATCTGGTGTTGATAATGGAGCTACACTTGAAACTGGAGGTGAGAGATTTGGCACTGGGGGCTACTTTATTAAGCCCACTGTTTTCTCCAATGTTCAGGATGACATGTTGAAAGCACAGGATGAGATCTTTGGACCAGTGCAGTCCATCCTGAAGTTCAAGGACCTTGATGAGGTGATAAGAAGGGCAAATGCCTCTAACTGTGGACTGGCTGCAGGAGTCTTTACCCAGAACATAGACACTGCCAACACCTTGACACGGGCATTAAGAGTTGGGACGGTGTGGATTAATTGCTTTGATGTCTTTGATGCTGCTATTCCTTTTGGTGGATATAAGATGAGCGGGAATGGCAGGGAGAAGGGAATTTATTGTCTTCAAAACTACTTGCAAGTGAAGGCTGTTGTTTCTCCCTTGAAGAACCCAGCATGGTTGTAA 1764 0.4467 MYAWKIGPALACGNTVVLKTAEQTPLSALYVSKLFHEVAFTGSTKTGEAILQSAAMSNLKPVTLELGGKSPFIVCEDANVDEAVEMAHFALFFNQGQCCASGSRTFVHESVYDEFVEKAKARALRRTVGDPFKAGIEQGPQIDSKQFEKIMRYIRSGVESGATLESGGERFGKERSRVMWRFADLLEDHNDQIAALETWDNGKPYEQAAKVEFLETWKSFLYTNSSGWADKIHGLTIPADGLHHVQTLHEPIGVAGQIIPWNFPLLMYAWKVGPALACGNTVILKTAEQTPLSALHAGLPPGVLNVVSGYGPTAGAALASHMDVNKLAFTGSTETGKIVIQLAEKSNLKPVTLELGGKSPFIVCEDANVDEAVELAHFSLFFNQGQCCCAGSHTYVHERIYDEFVEKAKARALKRVVGDPFKAGTEQGPQIDSEKFEKILRYIRSGVDNGATLETGGERFGTGGYFIKPTVFSNVQDDMLKAQDEIFGPVQSILKFKDLDEVIRRANASNCGLAAGVFTQNIDTANTLTRALRVGTVWINCFDVFDAAIPFGGYKMSGNGREKGIYCLQNYLQVKAVVSPLKNPAWL* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0839 587 SUPERFAMILY ALDH-like 1 170 IPR016161 GO:0016491
Vvi1g0839 587 SUPERFAMILY ALDH-like 174 580 IPR016161 GO:0016491
Vvi1g0839 587 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 64 71 IPR029510 GO:0016491
Vvi1g0839 587 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 173 577 IPR016162 GO:0016491
Vvi1g0839 587 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 37 IPR016162 GO:0016491
Vvi1g0839 587 Pfam Aldehyde dehydrogenase family 37 169 IPR015590 GO:0016491
Vvi1g0839 587 Pfam Aldehyde dehydrogenase family 173 577 IPR015590 GO:0016491
Vvi1g0839 587 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 359 548 IPR016163 GO:0016620
Vvi1g0839 587 FunFam Aldehyde dehydrogenase3 68 197 - -
Vvi1g0839 587 FunFam Aldehyde dehydrogenase, putative 549 575 - -
Vvi1g0839 587 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 353 360 IPR029510 GO:0016491
Vvi1g0839 587 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 381 392 IPR016160 GO:0016491
Vvi1g0839 587 FunFam Aldehyde dehydrogenase, mitochondrial 114 377 - -
Vvi1g0839 587 FunFam Mitochondrial aldehyde dehydrogenase 2 359 548 - -
Vvi1g0839 587 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 38 116 IPR016162 GO:0016491
Vvi1g0839 587 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 173 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0839 Vvi-Chr1 8847246 8851544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0839 174 587 Aldehyde Dehydrogenase Gene Family AT3G48000 74.109 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0839 K00128 - vvi:100267386 725.702