Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0837 ATGACTCACAAAATTCACGCCTCCCCTCGCCGGATACTCACATTTCCGGCGGTTCATCCCTGCGATGCCGTTGCCCCGGCGACGCTTCTCGCCTCTCTGGTCAATCTTGCTACCACCATTTGCGGATACAAGTCCAAATTCTTTGCTGCCAATAAGCGGAACACACGAGAATTGATTCGCCAAATAGGAATTCTTCTGGTTTTCTTGGAGGAAATCCTGGACCGGCGGCTGGATCTTCCGGCGTCGGCTGTTCTCAGCTTCTCGGAGCTCCATGTGACGCTCCAGAAGATCGTGTACTTGTTGGAAGATTGCTCGTTCGGTGGTGCCCGGTTGTTGATGCTGATGAAATCGGAGAGGGTTTCGAATCATCTTAGGATTTTGATTAGGGCTACTGCGACCGCTCTAGATGTGCTTCCTTTGGAGTTGATCGATGTGTCTGATGAAGTTAAAGAATCGGTTGAGTTGACGATGAGGCAAGCACGGAGGGTGAGATTCGAGGTTGAAGCCGATGATGAACGGGCTTCTAAGGATGTTCTTTTGATATTGGACGGATTCGAAGATGGAGTTGTTCCTGATAGAGGTGATATCAGAAGAGTTCTTGATTATGTTGGGATTCGAAGTTGGAGTGAGTGTAACAAGGAGGTTAAGTTCTTGGATACAGAGCTTGGGTTAGAGTGGTCGAATATGGAAAAGAGGGAGGTTGCTTTTCTTAGCAGTCTAATGGGGTTTATGAGCTACTGTCGCTTTGCATTGTTCGATGTTGTGGATGGCGAAGCCGGGCAACAATTGGATAAGGAATGCAGCAGTGACGTGCTTAATTGCCTTAACCCCGATGATTTTCGATGTCCTATCACTCTTGAGTTGATGACTGATCCAGTGACGATAGAGACAGGGCATACCTACGAGCGATCTTCCATTCTGAAATGGTTCAGAGCAGGAAATCCCATCTGTCCCAAGACAGGTGAGAAGGTTGTGAGCATGGATGTAGTCCCCAATATGGCTCTCCAGAGGCTTATCCAGCAGTACTGTTCTGCTAATGGTATTCCAATTTCTGAGCCGGGTCATAGGAATCATGATATTACAAGGACGGTTCTAGCGGGTAGTTTAGCAGCTGAGGGAGCCATGAAAGTGATGGCCAATTTTCTTGCTGGCAGGCTTGCGGCTGGAACTAGTGGAGAGAGGAATAAAGCTGCTTACGAAATTCGTTTACTTGCTAAAACAAACATTTTCAATAGGTACTGCTTGGCGGAAGCAGGGACAATCCCACGTCTATTGCATCTGCTTTCTTCTGGAGATTCATCCAGTCAACATAATGCCATTGCAGCCCTCTTAAACCTTTCAAAGTATTCGAAAAGCAAAACAATCATGGCTGAGAATGGGGGCTTGGAATTGATTGTAGGTGTTCTAAGGAAGGGACTAAAGATAGAGGTTCGAGAGCTTGCAGCTGCTACACTATATTACCTTGCTTCAGTGGAGGAGTACAGGAAATTAATTGGGGAAATTCCAGAGGCTTTTCCAGCTCTGCTGGAGCTCATCAAAACCAGGACCGATCGGGGCAAGAAGAATGCATTGGTTGCTATCTTTGGGCTCCTTACGTTCCCTGACAACCATTGGAGGGTGCTTGCATCAGGAGCAGTCCCCTTACTGGTCAATCTTTTGACATCTTCTGAGAGGGAAGATCTGGTAACGGCTTCTCTAGCAGTTCTAGCAACTCTAGCAGAGAAACTAGATGGAACAATTACAATCCTAGGAACGGGAGCTTTACATCTCATCTTGCAGATTCTAAATTCGTCCCCTTCAAGGCCAGGGATAGAGTATTGTGTTTCACTGTTGTTGGCTCTGTGCATCAATGGTGGGAAAGAAGTGGTTTCTGTTTTAGTAAAAAACCCTTCTCTCATGGGATCATTATATTCCCTTCTCACCGAAGACAACTCCCGAGCAAGTAAGAAGGCCAGGTCGCTCATCAGGATCCTCCATGAATTCTGTGAAAGACGTGCCTCTGGCTTGGTGACTCCAGCATTTCCAGAAGAAAGATATGTTGACGTATGGTAA 2052 0.4678 MTHKIHASPRRILTFPAVHPCDAVAPATLLASLVNLATTICGYKSKFFAANKRNTRELIRQIGILLVFLEEILDRRLDLPASAVLSFSELHVTLQKIVYLLEDCSFGGARLLMLMKSERVSNHLRILIRATATALDVLPLELIDVSDEVKESVELTMRQARRVRFEVEADDERASKDVLLILDGFEDGVVPDRGDIRRVLDYVGIRSWSECNKEVKFLDTELGLEWSNMEKREVAFLSSLMGFMSYCRFALFDVVDGEAGQQLDKECSSDVLNCLNPDDFRCPITLELMTDPVTIETGHTYERSSILKWFRAGNPICPKTGEKVVSMDVVPNMALQRLIQQYCSANGIPISEPGHRNHDITRTVLAGSLAAEGAMKVMANFLAGRLAAGTSGERNKAAYEIRLLAKTNIFNRYCLAEAGTIPRLLHLLSSGDSSSQHNAIAALLNLSKYSKSKTIMAENGGLELIVGVLRKGLKIEVRELAAATLYYLASVEEYRKLIGEIPEAFPALLELIKTRTDRGKKNALVAIFGLLTFPDNHWRVLASGAVPLLVNLLTSSEREDLVTASLAVLATLAEKLDGTITILGTGALHLILQILNSSPSRPGIEYCVSLLLALCINGGKEVVSVLVKNPSLMGSLYSLLTEDNSRASKKARSLIRILHEFCERRASGLVTPAFPEERYVDVW* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0837 683 SMART arm_5 533 574 IPR000225 GO:0005515
Vvi1g0837 683 SMART arm_5 449 490 IPR000225 GO:0005515
Vvi1g0837 683 SMART arm_5 407 448 IPR000225 GO:0005515
Vvi1g0837 683 FunFam RING-type E3 ubiquitin transferase 356 669 - -
Vvi1g0837 683 PANTHER U BOX DOMAIN-CONTAINING 57 658 - -
Vvi1g0837 683 SUPERFAMILY RING/U-box 277 350 - -
Vvi1g0837 683 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Vvi1g0837 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 349 IPR013083 -
Vvi1g0837 683 CDD RING-Ubox_PUB 277 323 IPR045210 -
Vvi1g0837 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Vvi1g0837 683 Pfam U-box domain 277 346 IPR003613 GO:0004842|GO:0016567
Vvi1g0837 683 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Vvi1g0837 683 SUPERFAMILY ARM repeat 390 658 IPR016024 -
Vvi1g0837 683 Gene3D - 381 658 IPR011989 -
Vvi1g0837 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 587 IPR000225 GO:0005515
Vvi1g0837 683 FunFam RING-type E3 ubiquitin transferase 276 348 - -
Vvi1g0837 683 Pfam Armadillo/beta-catenin-like repeat 411 447 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0837 Vvi-Chr1 8824136 8826187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0837 1 683 U-box Gene Family AT1G60190 45.036 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0837 - - vvi:100243339 1310.82