Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0836 ATGGCTAAATCCATGTCGAATTTCCCTAGCTTTAACCCAGTGAAGCATCAAAAACCACCAACTTCAATAATCTTCATCATCTTGACAACCATCATCAGTTCAGTGTTGTCAGAACTTTTAGTCACTGATTGCAGCCTTGATATCCAATTTTCTTCACCCGGAAACGACTCATATTCTGAAGCAGGCAATTGGGGTGGATTTCTTTACCATAAAGGTTGTGCGGTAGCTTTTGAAGGTTACTTGTATGCATTGGGGAGGCAAGCTAACAAGACCGGACGAATATTCTCCAATTCCACAGAGCAGAAAAATTGCTTAGATTCAATGAAAAGTATTGGTGAAGATGGTTTGAGTTGTGGCATCGAGAGGCTGGTCACTGGAGCCAGTGACTGCTCTGACTATACAGTAAAGGATGTTGATGATAAGCTAGGAAAAAGATTAAGGAAATTAGGTGAAGATTGCCAATCTTTGGGCTCAGAGGGCAAACCGGATCATCAGGATTGCAATGCATGTTTAAGATCATGGGACGAGATAGGTGGATCAGGAGATGAAAGAGCTGATGTTTGCAGGTTTTCAGTTTTGGTGTCATTGATAAGCAAAAGGATTGGTGAGAAGAAATGGGTGCAGGAAGTTTGTAGATGCCTCCGAAAGCAGAGCACCCCCATGGCAATGGATGGACAAGAAGGGTCAGTTGAAAAAAAACCTAATATAAGAAAAGGTCTGTATTTTGTCATCGGAGGTCTAATGGGAATTGCAGTAATAGTACTGATTGCATCATGGATCTTATGCAGTAGAAGGCATAAAGACGACTACCCAAAAGGAAAAGATGCATCAGATGATTCAGAATCTGAGGAGTTTAGATGTCTTAACATATCAATTAAGGAAATTTATTCCGCCACCAACAATCTTAGTGCATCAAACTTCATTGGTCAAGGCATAGCTGGAAAAGTGTACAGAGGCATGCTATCAAATGGTCAGCATATTGCAGTTAAGCACATATTCGACAATGAGTGTGTGGAAACATTCATCAGGGAAGTTACAAGCTTATCACATGTCAGACATCCAAACCTTGTAACTTTGCTAGGCTATTGTGAGAAAGAAGAAGAATGTTTCCTGGTTTATGAACTATGCCACAATGGGAATCTCTCAGAATGGCTATATGGTAAAGACAAAGTTCTTTCCTGGATCCTAAGACTGGAGATTGCAATTGATTGTGCTAGAGGTCTCTGGTTTCTCCACACTTATCCAGAAGGCTGCATTGTTCATCGTGACATCAAGCCAACAAATATTCTCATCAGCGCTAACTTTCACGCTAAACTCTCGGATTTTGGGTTATCTAAGGTTATGGACCTGGATCAGTCCTATGTGAGCTCAGAAGTGAGAGGAACTTTTGGTTATGTTGATCCCGAGTACCAAATAAATCATCATGTAAATTCTTCAGGTGATATTTACAGTTTTGGCATAGTACTACTGCAAATTCTCTCAGGGAAGAGGGTTCTTAACCTGAATTCGAAGAAACCAATGCCTCTAGATAAAATGGCAAGATTCCTCATGAAGGGTCGAAATATATCAGAATTTGCTGATCCTAAACTTAATGGGGAATACTCAGTGGAAGCTTTTGAACTCATATTGGAGCTAGCTTTGACATGCACAGGACTAAAGAAGCATAGGCCATCCATAGAGCAAGTGGTTATAATACTAGAAAAGGCTCTTGATATCTCAAGAAGAGTGGAGCTTACTGCACCACATTCCACACCATACATCGTTTAA 1767 0.4058 MAKSMSNFPSFNPVKHQKPPTSIIFIILTTIISSVLSELLVTDCSLDIQFSSPGNDSYSEAGNWGGFLYHKGCAVAFEGYLYALGRQANKTGRIFSNSTEQKNCLDSMKSIGEDGLSCGIERLVTGASDCSDYTVKDVDDKLGKRLRKLGEDCQSLGSEGKPDHQDCNACLRSWDEIGGSGDERADVCRFSVLVSLISKRIGEKKWVQEVCRCLRKQSTPMAMDGQEGSVEKKPNIRKGLYFVIGGLMGIAVIVLIASWILCSRRHKDDYPKGKDASDDSESEEFRCLNISIKEIYSATNNLSASNFIGQGIAGKVYRGMLSNGQHIAVKHIFDNECVETFIREVTSLSHVRHPNLVTLLGYCEKEEECFLVYELCHNGNLSEWLYGKDKVLSWILRLEIAIDCARGLWFLHTYPEGCIVHRDIKPTNILISANFHAKLSDFGLSKVMDLDQSYVSSEVRGTFGYVDPEYQINHHVNSSGDIYSFGIVLLQILSGKRVLNLNSKKPMPLDKMARFLMKGRNISEFADPKLNGEYSVEAFELILELALTCTGLKKHRPSIEQVVIILEKALDISRRVELTAPHSTPYIV* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0836 588 ProSiteProfiles Protein kinase domain profile. 302 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0836 588 SMART serkin_6 302 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0836 588 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 226 567 - -
Vvi1g0836 588 SUPERFAMILY Protein kinase-like (PK-like) 285 566 IPR011009 -
Vvi1g0836 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Vvi1g0836 588 Gene3D Phosphorylase Kinase; domain 1 267 375 - -
Vvi1g0836 588 Pfam Protein kinase domain 306 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0836 588 Gene3D Transferase(Phosphotransferase) domain 1 376 579 - -
Vvi1g0836 588 FunFam Serine/threonine kinase protein 265 375 - -
Vvi1g0836 588 FunFam probable receptor-like protein kinase At5g59700 376 584 - -
Vvi1g0836 588 Pfam SPARK 43 179 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0836 Vvi-Chr1 8820860 8823836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0836 290 574 Receptor kinase-like Gene Family AT1G67720 38.488 4.37e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vvi1g0836 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0836 - - vvi:100248463 1172.53