Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0833 ATGGACTCAGACTCCGCCTCCGCCTCCGCCTCCGCCTCCACCTCCACCTCTCAACCCTCCCGGCGAACCCACTACAGCTTCGATCTTAACGAAATTCCTTTACCTTCCCCTCGTCACCATACGATTCCCGAAACCGCCGCTCCCTCCACTTCCGCTGAAGTTTCCGCTCCTGCATGCGGCGGAAGAGCCAAAGTCGAAACTCCCGCGGTTGTCTGCGGCGGCTGTGGCGGCTGCGGCGCGCAATGTTTGGATACGAGACAACTAGAAGCTGTTAGGGCTGGGCAATGGATGTGTACAAGATGTACGGGAAATGGAAATGGAAATGGTGGAAGTAGTGGAAGAGTACCGGAGCGGAATCGCCTCTTCGATATCAATGCGATGCCGCCGAGTGATGAGGAGGGCGATGGGAGCGAGGAATTGCAGAATTCTAGGGCTTTTGTCCTCGTGTCATATAGTGTTCCATTGGACATTGTTTGGGAGAATGAATTTCCAGTTCAGTTCGAAGATTTCTATATTCTCTCTCTGGGGAAGATTGACTCACGACCTTCATATCATAATTCTAGCCTGATATGGCCTGTAGGTTATAAATCCAGCTGGCATGATAAGATTACTGGCTCTTTTTTTGTATGTGATGTCTTGGATGACGGTGATTCTGGTCCAGTTTTCAAGGTTCGAAGATTTCCATGCTCCATGCAGCCCATTATTAATGCATCAACAGTTTTATCGATGCCAAACTTTACCCAAAATGATGTTAAAAACAAAGTGGGAAGTGACAATTCAGCTTCTTTTGGTATGGATGATGATGATGATTCCAGTATTCAGATGATATTCTCAGAGAATGACCCTCCAAATCTTGATTATGATGTTTTATCATGTTCTCAGAATGGTTTGAATGAAGATTGTGATGTTCAAACAAAGAGTAGTTCACAAACAGAATCCAATTGCCGCCTTCTACAAAGTTCTGGAAAACTTGTGCTGAGTAATTTAAGGGTGGAGGATAATATTGGTGAGTTTCTAGTAGAAGCAAGCTCATCATCTTCAGCATGGAGTAAGGTATCTCAGACTGTGGTGCATGCATGCTGTGAAGCATACAAGCAGACAGGTGTTCTCCAGTTTTGTTGCAAGCATGATCTAGATCAAATATGGACACCATATGCAACCTTGAATGCTGATGCAGCAGCATCTATTGGGTCATTAGCCAAGTTTTGCAATTTTTGTGGTCCTATTAACATTCCGTGTTGTATTCAGAATGACAGCGTGCTTGATACTTCTTGTGACGCATTGATAAAATGGTTAGACCAAGACAGATTTGGACTGGATGTTGAATTTGTACAAGAAATCATAGAACATCTTCCTGGGGTTCATGCCTGTTCAGAATATGAATTTCTGAATAGAAGAACTCACAATTCAACACCACAAACATTTAGAAGTGGGTTTCTTCTTGCAAAAAGGAAGAGTGAGGTGCAAGGTGGGGAAAAAGCAGGTAATTTATTCAAATGTAAAAGACCTAGGAAACAGGTGGTTGAAAGCCCTGTCATAAGGGATTGCTGTCCTCCTGGAAAGCCATTAAGCTTAACACTTCCTGCCGATTTGATTGGTGATGTTCTTCAGATTTGGGAGTCATTATGGCGGTTCTCCGAGGTTTTGGGGCTGGAGGAACCTATATCATTTGAAGAGCTTGAAGAGGAACTTTTGGACCCATGCTTTGATGGTTTAAATTCACTAGAAAACAAAGAAAATGGAACACAGGGTGGTAGAGATTTGTGTAGAAGTGATGGCACAAATGGATGTAACTTGTCTCTATGCAGTGCTTCTGCATCAGGTGTTTCTGGGAAGAATGCACAAGCATTAAATACAATGGAAACAGAGTCTAAGAGAGAAGCTTCTCAAGCTAGATTGGCATCTCATAACTATGGCAGATTTATTGGGGTAGCTTTGACTAAGGCTCACAGCGCACTGCTGAAAGTTCTGGTAGGTGAATTGCTATCCAAGGTTGCTGCTTTTGCTGACCCTAATTTTGATGCTGGAGAGTCTAAATCTAGACGGGGAAGGAAGAAAGATGCAGATAACTTAATTCCTGTTAAGAAAATGAAGGTTGACAAGCTCCCAATTAATGAACTTACTTGGCCAGAATTAGCTCGGAGATACATTTTAACCATCTCATCCTTGGAGGGGAAATTTGACTGTGCAGAAATTAATAGCCGCGAGGGTTGGAAAGTGTTTCGTTGCCTACAAGGTGATGGCGGGACACTTTGTGGTTCACTTACAGGAGTGGCTGGAATGGAAGCGGATGCACTGCTGCTTGCAGAGGCTACAATCAAAATCTTTGGTTCAGTGAAGAGTAAAAATGACATTCTGAGAATAGATTGCATCAAATCTGATGCAGTTGGTGCTTACAAAACTGCTGAGTTGAATGATGGTGAAATTCCAAAGTGGGCTCAAGTGTTAGAACCTGTGAGAAAGCTGCCCACAAATGTGGGAGCCAGAATTAGGAAGTGTGTCTATGATGCTTTAGACAATGATCCACCAGAATGGGCAAAGAAGATATTGAAGCACTCAATCAGCAAAGAAGTTTACAAGGGCAACGCATCAGGGCCTACCAAGAAAGCTGTTATCGCATTGCTGGCAGATGTCCACAGTGGAAATGTTCAAAGGAGACCTGACAAGAAAAGGAAAGGGAAGCGTGTTCGTTCTGCTTCTGATCTCATAATGAAACAATGCAGAACTGTTCTACGTCGTGTTGCTTCTACAGATAAAGAAAAAGTTTTCTGTAATTTGCTGGGAAGAATTATGGATCCAAATGATAACGACGATAAGGGACTTCTTGGATTTCCTGCAATGGTATCCCGTCCATTAGATTTCAGGACCATTGATCTGAGATTGGCCGTTGGAGCGTATGGTGGATCAAATGAAGCCTTCCTCGAGGATGTCCAGGAGGTTTGGCACAATATATGCATTGCTTATAGGGATTCTGATGACATCAGTTTGGCTGAAGCATTATCTAAAGATTTTGAATCATTGTATTCAAAAGAGGTTCTCACCCTCGTCCAGAAATTTATGAGTTATGCAAATGTTGAATTTTTAAATGCTGAGGCCAAGAAAGAGCTTGAAGATACCATTGCATGTGCAGATGAGATTCCCAAAGCTCCCTGGGATGAGGGCCTCTGCAAAGTGTGTGGTGTAGATAAAGATGATGACAATGTTTTATTGTGTGATGCTTGTGATTCTGAGTACCATACATATTGCTTAAACCCCCCTCTTGCTAGAATTCCTGAAGGAAACTGGTATTGTCCTTCTTGTGTTGCTGCTCAGCGTCTCAGTCAGGGCACATCACGAAGTGCTGAGGTCTTTAGCCGATGCCGAAGAAAGAGATATCAGGGAGAGTTTACTCGCACATATCTGGAAACTCTGACCCATTTGGCAACTATAATGGAAATAAAAGAGTATTGCGAGTTGAGCATAGAGGAGAGAGTATTCCTCCTAAAGTTTTTCTGTGAGGAAGTGCTGAACTCTGCTATCATTCGTGAACACCTAGAGCAATGTGCCTCTTTATCAGCTGATTTGCAGCAGAAATTACGTACACTCTCTTTAGAGCGGAGAAACCTGAAATTGAGGGAAGAAATCCTAGCTGTGAAAGTGGAAAAAGCCAACTCAGTTGGGCTTGATGGGGTTGGTGGCGAAGCTGGAACAGAAGCAGTGGCTATGATGCTTAAAAACTATAGTAAATTGATGGTGCAGCCTCTTAATAAAAGCAACTATTTTGCATCCTTCCCCAGTAATCTGGTATCATTAGAGGATGGTCAGCAGGAGAATGAGCAAAATGATTTCAATAAACCACCATACTGGTTCAATGCAAAAGGCTTTTTGGAGAAACACCATGCTACTAGTAGAGATCTGAGTATGAAGACTCCTGATACTGATGATCAAATGAAATATCAGCACTTGGCCAAGGATAACAGTGTACCACATGAGAATCATTTTTCTAGTACTCCTTTCTTTAGAAAAGATGACTTCAGCAGTTTAAACAAGCTACCTCTGTTTACTCCCCAGAGCCAGAAAATTAACTCGGGTGAAGGAAATGATTCCAGGAGTAACTTTAACAGCAAACTGGAGTCAGAAAAGGATGATGATAATGGTTCTGTGCTGCCTAGTGAAATTTTGCAACGTGGTATTTTGTTTGATGCCATTAGAACCAATATTTCTGAGCATGTACATGCTATGCATGTGAACTCAGAAAATATGTTACTAGACCATAATGGCATTGGTCAACCTGTTGCAATTGAATCACAAGCCTACAACCAGGAGGCAGATTCCCTGAAGAATGAGATTTCTGTTTTGCAGGATTCAATTGCAAGCTTAGAATCACAACTTCTGAAGGTGTCCATGCGGAAGGAGTTTTTGGGAAAAGATTCTGCTGGGCGCCTGTACTGGGTTTTTTCCAGGGCAGGTACATCTCCATGGGTAGTTATTGATGGGAGTATGATGGCAGGGCTGAGGGGAGGTGAAGCAAAAGAGCATGAAGACACACTAGCTAACAATTCCACTCTAAGGGGCTCTTTTCCATGTGGCAGAGAAAAAAAATTTAGCTCAAGGGAATTTAATATTTCCAACCGGCACATGCATGACCAGGAGTACAGCATCCCCATGTCTTTTCCATGGGTTTCTTGTCAATCCAATGATGAAATTGAAGAACTCATTCAATGGCTGAGAGATAATGAGCCAAGAGAGAGAGAGCTGTTGGAATCTATTTTGCAGTGGCAGAGAACCAAATATAAGGACTCCAACAAAGCTAAAAGTTATGTTAAGGATGAGCAACCAACTTCCTCAAAGACCAAAAATAGCGAAAGAACTCTTGATTATCTTAAGACCAGGGCTGGGACTATCCTGGAGAAGAACATGGTGAATGATGAATCTGGGAAGGGTAAGATGATGATGAACACTGATGCCTTGCAGGAGCACTCTGATGATCTAGGAATGATTGGAGCATCAAAAAGTGAAAAGCATGAGACTGTCTCTGGGTTGATTAATTTTGACAAGGAGTTGATATGCCCATTTGATATTGAGGAGATCAGTACGAAGTTCATTGTTAAAAGCTCTAATAAGGAATTGGTGCGAGAGATAGGGCTTATTGGTTCAAATGGGATCCCATCATTTCTACCAAACACATCTCCTTACTATCTTAATGACCCCACGCTAATGTTGCTGGCCAGGGAAAATGAGGTTAATCCACATAAGAAGTCCTTGATTATGGAAAATCAACTCCAACAAGGTCCAGAAAGGAATATGGCAGCCGGTATAAAGTATTATCATCCTTCCAATGATTCTACCAGAAGATGCTCTATGGATGGCATTGGTGAAGCATTTTTAGAAACTGAAAAATTGAGATTGAATTGTATAAATGGAAGAGATCAGTCCTCTAGTACAAATCAAACTTCAGAAGGGGGTTTGGGTAATTGCTGCATCATTAATGAATCTTCATTGAAACCACTAGAGGGCTGGGCTTCTCAATTTCTGAGGAAGCTTAAGATTGATCTGCTTGATATGGATGCTGCACTACCTGAAGAAGCAGTAAAGCCTTCAAATGCTAGTTTGGAAAGAAGATGTGCATGGCGTGCATTTGTTAAATCTGCCGTGTCAATATTTCAGATGGTTCAGTCAACAATTATACTAGAGAACATGATTAAGACCGAGTACTTGAGGAATGGGTGGTGGTATTGGTCATCACTCTCAGCTGCAGCCAAGATATCTAATATTTCGTCCCTTGCTCTCCGCATATACACCCTTGATGCTGCCATTGTTTATGATGGGCCCTTGCCTGGATGTAGTTCCACAGAAATTGAAAAGCTGGGCAGTGAGTCAGACAAAAAGTTGCCCATCTATCCAAATCCCACCAGTAATCCAAAATCCAACAGCAGGACAATTCAAAAAACATCCAATTCGGATTCAACTGACAGGCCCAAACCTAGAAGCAAATCAAGCAAGAAAAGGAAAGACTGA 5997 0.4237 MDSDSASASASASTSTSQPSRRTHYSFDLNEIPLPSPRHHTIPETAAPSTSAEVSAPACGGRAKVETPAVVCGGCGGCGAQCLDTRQLEAVRAGQWMCTRCTGNGNGNGGSSGRVPERNRLFDINAMPPSDEEGDGSEELQNSRAFVLVSYSVPLDIVWENEFPVQFEDFYILSLGKIDSRPSYHNSSLIWPVGYKSSWHDKITGSFFVCDVLDDGDSGPVFKVRRFPCSMQPIINASTVLSMPNFTQNDVKNKVGSDNSASFGMDDDDDSSIQMIFSENDPPNLDYDVLSCSQNGLNEDCDVQTKSSSQTESNCRLLQSSGKLVLSNLRVEDNIGEFLVEASSSSSAWSKVSQTVVHACCEAYKQTGVLQFCCKHDLDQIWTPYATLNADAAASIGSLAKFCNFCGPINIPCCIQNDSVLDTSCDALIKWLDQDRFGLDVEFVQEIIEHLPGVHACSEYEFLNRRTHNSTPQTFRSGFLLAKRKSEVQGGEKAGNLFKCKRPRKQVVESPVIRDCCPPGKPLSLTLPADLIGDVLQIWESLWRFSEVLGLEEPISFEELEEELLDPCFDGLNSLENKENGTQGGRDLCRSDGTNGCNLSLCSASASGVSGKNAQALNTMETESKREASQARLASHNYGRFIGVALTKAHSALLKVLVGELLSKVAAFADPNFDAGESKSRRGRKKDADNLIPVKKMKVDKLPINELTWPELARRYILTISSLEGKFDCAEINSREGWKVFRCLQGDGGTLCGSLTGVAGMEADALLLAEATIKIFGSVKSKNDILRIDCIKSDAVGAYKTAELNDGEIPKWAQVLEPVRKLPTNVGARIRKCVYDALDNDPPEWAKKILKHSISKEVYKGNASGPTKKAVIALLADVHSGNVQRRPDKKRKGKRVRSASDLIMKQCRTVLRRVASTDKEKVFCNLLGRIMDPNDNDDKGLLGFPAMVSRPLDFRTIDLRLAVGAYGGSNEAFLEDVQEVWHNICIAYRDSDDISLAEALSKDFESLYSKEVLTLVQKFMSYANVEFLNAEAKKELEDTIACADEIPKAPWDEGLCKVCGVDKDDDNVLLCDACDSEYHTYCLNPPLARIPEGNWYCPSCVAAQRLSQGTSRSAEVFSRCRRKRYQGEFTRTYLETLTHLATIMEIKEYCELSIEERVFLLKFFCEEVLNSAIIREHLEQCASLSADLQQKLRTLSLERRNLKLREEILAVKVEKANSVGLDGVGGEAGTEAVAMMLKNYSKLMVQPLNKSNYFASFPSNLVSLEDGQQENEQNDFNKPPYWFNAKGFLEKHHATSRDLSMKTPDTDDQMKYQHLAKDNSVPHENHFSSTPFFRKDDFSSLNKLPLFTPQSQKINSGEGNDSRSNFNSKLESEKDDDNGSVLPSEILQRGILFDAIRTNISEHVHAMHVNSENMLLDHNGIGQPVAIESQAYNQEADSLKNEISVLQDSIASLESQLLKVSMRKEFLGKDSAGRLYWVFSRAGTSPWVVIDGSMMAGLRGGEAKEHEDTLANNSTLRGSFPCGREKKFSSREFNISNRHMHDQEYSIPMSFPWVSCQSNDEIEELIQWLRDNEPRERELLESILQWQRTKYKDSNKAKSYVKDEQPTSSKTKNSERTLDYLKTRAGTILEKNMVNDESGKGKMMMNTDALQEHSDDLGMIGASKSEKHETVSGLINFDKELICPFDIEEISTKFIVKSSNKELVREIGLIGSNGIPSFLPNTSPYYLNDPTLMLLARENEVNPHKKSLIMENQLQQGPERNMAAGIKYYHPSNDSTRRCSMDGIGEAFLETEKLRLNCINGRDQSSSTNQTSEGGLGNCCIINESSLKPLEGWASQFLRKLKIDLLDMDAALPEEAVKPSNASLERRCAWRAFVKSAVSIFQMVQSTIILENMIKTEYLRNGWWYWSSLSAAAKISNISSLALRIYTLDAAIVYDGPLPGCSSTEIEKLGSESDKKLPIYPNPTSNPKSNSRTIQKTSNSDSTDRPKPRSKSSKKRKD* 1999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0833 1998 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1136 1179 IPR028942 -
Vvi1g0833 1998 ProSiteProfiles FYR domain FYRN motif profile. 162 215 IPR003888 GO:0005634
Vvi1g0833 1998 ProSitePatterns Zinc finger PHD-type signature. 1056 1100 IPR019786 -
Vvi1g0833 1998 Pfam PHD-finger 1056 1101 IPR019787 -
Vvi1g0833 1998 CDD PHD1_Lid2p_like 1056 1100 - -
Vvi1g0833 1998 MobiDBLite consensus disorder prediction 1349 1366 - -
Vvi1g0833 1998 PANTHER OS02G0192300 PROTEIN 11 143 - -
Vvi1g0833 1998 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1463 1587 IPR028941 -
Vvi1g0833 1998 ProSiteProfiles Zinc finger PHD-type profile. 1053 1103 IPR019787 -
Vvi1g0833 1998 MobiDBLite consensus disorder prediction 1349 1381 - -
Vvi1g0833 1998 MobiDBLite consensus disorder prediction 1958 1981 - -
Vvi1g0833 1998 SUPERFAMILY Bromodomain 892 1010 IPR036427 GO:0005515
Vvi1g0833 1998 Coils Coil 1185 1205 - -
Vvi1g0833 1998 Gene3D - 163 266 - -
Vvi1g0833 1998 ProSiteProfiles FYR domain FYRC motif profile. 322 464 IPR003889 GO:0005634
Vvi1g0833 1998 SUPERFAMILY FYVE/PHD zinc finger 1047 1103 IPR011011 -
Vvi1g0833 1998 Coils Coil 1429 1456 - -
Vvi1g0833 1998 MobiDBLite consensus disorder prediction 1950 1998 - -
Vvi1g0833 1998 Gene3D - 884 1006 IPR036427 GO:0005515
Vvi1g0833 1998 SMART PHD_3 1055 1101 IPR001965 -
Vvi1g0833 1998 MobiDBLite consensus disorder prediction 1 55 - -
Vvi1g0833 1998 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1007 1114 IPR013083 -
Vvi1g0833 1998 MobiDBLite consensus disorder prediction 1 25 - -
Vvi1g0833 1998 MobiDBLite consensus disorder prediction 1595 1616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0833 Vvi-Chr1 8788501 8805414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0833 1637 1998 C2H2 Transcription Factor Family AT3G01460 41.209 1.80e-59 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vvi1g0833 WSD 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0833 K22768 - vvi:100258715 3749.13