Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0818 ATGCGCCTCTCGATTATCGCTGCAAACAGAACTCCAGTTAGGAACTTCGGAGCAAAACTAGTCAAGGAAGAAAGTATGCCCCGCCAACGCAGTAACTTATCTAAACTTGATCGAAGTGCAGTAGAACGAAACAGAAGAATGCATATGAAAGATCTTTTTTCCAGGCTTGCTTTTCTTGTTCCTACTCGACCATCCAAGTCCTCTTTACATGTGTCGTTGGATCATGCCACCACTTATATAAAGCAATTGCAGAAAAGGATAGAGACGCTGAAGCAAACGAAGCAACTACTTCAAGGCAGCACTGATGAGACTGGAGGTGTAAGATGTCAGATGAGTGGCGCCTCCAGGTCACCAGTGATCACTGTAAGAGATATGGGTTCTAGTTTAGAGCTACTTCTGATTAGCGGGTCAAATAAGAAGTTCAGGTTGCATGAAGTTATCAGTGTTCTGGAGGAAGAAGCAGCTCAAGTTGTAACTGTTAACCAATGCATAGTGGGGGATAGGATCTGCTATAGTATACATTCCGAGGCTGTTAGCTCTAGAATTGGAGTAGACGCTTCAAGGGTGCATGAGAGATTGAAGGAACTGATTTTTTGA 597 0.4355 MRLSIIAANRTPVRNFGAKLVKEESMPRQRSNLSKLDRSAVERNRRMHMKDLFSRLAFLVPTRPSKSSLHVSLDHATTYIKQLQKRIETLKQTKQLLQGSTDETGGVRCQMSGASRSPVITVRDMGSSLELLLISGSNKKFRLHEVISVLEEEAAQVVTVNQCIVGDRICYSIHSEAVSSRIGVDASRVHERLKELIF* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0818 198 SMART finulus 39 89 IPR011598 GO:0046983
Vvi1g0818 198 Pfam Helix-loop-helix DNA-binding domain 38 84 IPR011598 GO:0046983
Vvi1g0818 198 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 83 IPR011598 GO:0046983
Vvi1g0818 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 104 IPR036638 GO:0046983
Vvi1g0818 198 Coils Coil 73 100 - -
Vvi1g0818 198 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 32 197 - -
Vvi1g0818 198 Gene3D - 24 106 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0818 Vvi-Chr1 8351970 8352795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0818 36 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 30.460 7.72e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g0818 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0818 - - vvi:104879556 374.015