Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0815 ATGCCCCGCCGGGGGAGTAAAGTACCTACACTTACTCGAAATATGTTAGAAAGAAACCGAAGAATGTTCACGAAAGATCTCCTTTCCAAGCTTGCTTCTCTAATTAATCCTACTCCACGGGCACCCAAGTGGAAGTCACTTGATTTGCTGGATCAAGCCACCGCTCATGTGAAGCAATTGGAACAAAGGGTAGAGATGCTGAAGCAAAGGAAGCAACTACTTGAAAGCAGTACTGATGAGACTGCGGGCATGAGGGGCTCGATGTCAACTGTTTTCACAGTGACAGAATTGGATTCTGCGGTAGAGGTATGTTTGATTAGCAGGTCAAATGACAAGTTCATCCTGACCCGGGCCCTAGATGTTCTTGAGGAGGAAGCAGCTCCAGTTGTATTTGTTAGCTACTCCCGTGCTGGCGATAGGATCAACTATATTGTTTATTCACAGGTAGAAATATCTTCAGATGCAATAGAACAGATTGATTCCATTGCCAGTCTTTGTTTAGTATTAATGTCATTTGATTGA 522 0.4387 MPRRGSKVPTLTRNMLERNRRMFTKDLLSKLASLINPTPRAPKWKSLDLLDQATAHVKQLEQRVEMLKQRKQLLESSTDETAGMRGSMSTVFTVTELDSAVEVCLISRSNDKFILTRALDVLEEEAAPVVFVSYSRAGDRINYIVYSQVEISSDAIEQIDSIASLCLVLMSFD* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0815 173 Coils Coil 50 77 - -
Vvi1g0815 173 Pfam Helix-loop-helix DNA-binding domain 12 61 IPR011598 GO:0046983
Vvi1g0815 173 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 148 - -
Vvi1g0815 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 74 IPR036638 GO:0046983
Vvi1g0815 173 Gene3D - 6 85 IPR036638 GO:0046983
Vvi1g0815 173 SMART finulus 14 66 IPR011598 GO:0046983
Vvi1g0815 173 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0815 Vvi-Chr1 8307232 8312598 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0815 10 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 27.564 4.60e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g0815 HLH 2.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0815 - - vvi:100853634 288.115