Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0812 ATGCGCCTCCTGGTCCACCTCCATTGCGTTCAATATGTCAACACAAGGCTCCTGTATTTGGAAAGCCCCCCAAGGTGGTTCAGCTATGTTGAGCTGGAGCTTGCTACTGGTGGATTTTTACAAGCTAATTTCTTGGCAGAAGGCGGGTTTGGATCTGTCCACAGAGGGGTCCTACCTGATGGCCAAGCAGTTGCTGTGAAGCAATACAAATTGGGTAGTTCTCCGGGTGATGTTGAATTTTGCTCAGAAGTGGAAGTCCTGAGCTGTGCTCAGCACCGAAAAGTTGTTATGCTGATTGGGTACTGTATAGAAGACAGAAGAAGGTTGCTAGTTTATGAATATAGATGCAATAGCTCACTGGATTCTCATCTATATGGACGCCATCGAGATCCACTAGAATGGTCTACTGGAGAAAAAGTTGCTGTTGGAGCTGCTCGAGGTCTGCGTTACCTTCATGAAGAATGCAGAGTGGGTTGCATTGTCCACCGTGACATGCGACCCAACAACATCCTCATCACCCATGATTTTGAGCAACTGGTTGGGGATTTTGGCTTAGCTAGGTGGCAGCCTGATGGAGACACGGGTGTGGAAACAAGAGTAATTGGAACATTTGGGTATTTGGCTCCAGAATATGCTCAAAGTGGCCAAATCACAGAAAACGCTGATGTATATTCTTTTGGGGTTGTCTTGGTGGAGCTTGTCATAGCATGGTTCAAAGTCGCGGTATCGGTCATTGACTCGGAGGGTCACGAGGCATATCGGTATCGGTGTCTCGGTTCGGTATCGGGCGATACGTAA 798 0.4774 MRLLVHLHCVQYVNTRLLYLESPPRWFSYVELELATGGFLQANFLAEGGFGSVHRGVLPDGQAVAVKQYKLGSSPGDVEFCSEVEVLSCAQHRKVVMLIGYCIEDRRRLLVYEYRCNSSLDSHLYGRHRDPLEWSTGEKVAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEQLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITENADVYSFGVVLVELVIAWFKVAVSVIDSEGHEAYRYRCLGSVSGDT* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0812 265 ProSitePatterns Tyrosine protein kinases specific active-site signature. 160 172 IPR008266 GO:0004672|GO:0006468
Vvi1g0812 265 PANTHER OS01G0750732 PROTEIN 19 234 - -
Vvi1g0812 265 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 11 114 - -
Vvi1g0812 265 Gene3D Phosphorylase Kinase; domain 1 6 114 - -
Vvi1g0812 265 ProSiteProfiles Protein kinase domain profile. 39 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0812 265 Gene3D Transferase(Phosphotransferase) domain 1 116 251 - -
Vvi1g0812 265 Pfam Protein tyrosine and serine/threonine kinase 44 234 IPR001245 GO:0004672|GO:0006468
Vvi1g0812 265 SUPERFAMILY Protein kinase-like (PK-like) 13 235 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0812 Vvi-Chr1 8296467 8297264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0812 27 243 Trihelix Transcription Factor Family AT1G68690 54.839 2.26e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vvi1g0812 PK_Tyr_Ser-Thr 1.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0812 - - vvi:100243170 503.442