Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0811 ATGCCCCGCCGGGGGAGTAAAGTACCTACACTTACTCGAAATGTTTTAGAAAGAAACCGAAGAATGTTCGCGAAAGATCTCCTTTCCAAGCTTGCTTCTCTAATTAATCCTACCCCACGGGCACCCAAGTGGAAGTCACTTGATGTGCTGGATCAAGCCACCGCTCATGTGAAGCAATTGGAACAAAGGGTAGAGATGCTGAAGAAAAGGAAGCAACAACTTGAAGGCAGCACTGATGAGACTGCAGGCATGAGGGGCTCGATGTCAACTGTTTTCACAGTGACAGAATTGGATTCTGCGATAGAGGTATGTTTGATTAGCAGGTCAAATGACAAGTTCATCCTGACCCGGGTTCTAGATGTTCTTGAGGAGGAAGCAGCTCCTGTTGTAGCTGTTAGCTACTCCCGTGTTGGCGATAAGATCCACTATATAATTAATTCACAGGCTGTTTGTTCTAGAATCGGCATAGACTCTTCAAGGGTGCATGAAAGATTGAAGAGGCTGACCGCAGGGCCATGA 519 0.4663 MPRRGSKVPTLTRNVLERNRRMFAKDLLSKLASLINPTPRAPKWKSLDVLDQATAHVKQLEQRVEMLKKRKQQLEGSTDETAGMRGSMSTVFTVTELDSAIEVCLISRSNDKFILTRVLDVLEEEAAPVVAVSYSRVGDKIHYIINSQAVCSRIGIDSSRVHERLKRLTAGP* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0811 172 Gene3D - 11 83 IPR036638 GO:0046983
Vvi1g0811 172 Coils Coil 50 77 - -
Vvi1g0811 172 Pfam Helix-loop-helix DNA-binding domain 12 61 IPR011598 GO:0046983
Vvi1g0811 172 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 168 - -
Vvi1g0811 172 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 75 IPR036638 GO:0046983
Vvi1g0811 172 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0811 Vvi-Chr1 8292775 8293469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0811 10 168 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 27.011 5.18e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g0811 HLH 3.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0811 - - vvi:104879567 318.546