Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0807 ATGGTCAACATGGTGCAGAGCCTCAAGGAGAGGCTGAGGCCTCTTGTGGGATTGAAAAGCTGGGACTACTGTGTTCTTTGGAAACTAAGTGAAGATCAAAGGTTTCTGGACTGGATGGATTGTTGCTGTGCTGGAAGCGAAAACAGTACTCAAAATGGTGAAGAGGAGATTCTTTTTCCTGTTTCCAGTGTACTTCCTTGCAGGGATGCCATGTTGCAGCATCCAAGAACCAAATCTTGTGATCTTCTTGCCCAATTGCCTTCTTCTATTTCCCTAGATTCTGGCATTCATGGACAGACCTTGATTTCAAACCAACCCAGATGGCTCAACTTCTGTAATAGTTCAGATTCAAGCGTTCTCGAAGAAACAGTTGGGACCAGGCTCTTGATTCCAGTGCTGGGAGGACTAATTGAACTGTTTGTTGCTAATCAAGTAGCTGAGGATCAACACGTAGTAAACTTCGTCACAACACAGTGCAACATAATCTTGATGGAGCAGGAAGCCATGATGAATTCAAGCAATATTGATACAATCTTCTCAGTTAATGCCAATGCAGGCAATGCAGATGAGGAAAAGGATCCCAACAATCATTTCCAGGCAACAATTTCCCCAGTAACAGCATTGGAGAACTTGAATGATCTGCCATTTGACATCTCAGTTGAACGAATCCGCCTATGCAGCTCTCCCATGAACTTCTTGCAGCAATTCAGTTACACCTCTGAGAGTAGCGTCAAGAATGATATCTTCTTTGAAGGATCCGATGGCTCATTTCTTTCAGAGAAGGTGATTAACCCCTTTATGTCCTCAGATTGTGGATTTCAGGAGATGGAGGCAATGCAGAAATCCATGATGGTGTGTACTAACAATTCCAAAAACATGCATAGAGAAATGATGGAGCCTCTAGCAAACAAGGAGCAGCTGGGTGATGATAAGGATTCGAGTACTAAACAAATGGCAAACCAAGCTGATTCAGTATCAGACTGCAGTGATCAGATTGATGATGATGATGATTTGAAGTACCGAAGGAGGACTGGAAAAGGGACTCAATCAAAAAACTTGGTCGCTGAGAGGAGGCGAAGGAAGAAGCTTAATGATAGACTCTATGCGCTTCGTGCTTTGGTTCCCAAAATATCTAAGTTGGATAGAGCTTCAATTCTGGGTGATGCAATAGAATTTGTGAAGGAGTTGCAGAAACAAGCAAAGGATCTTCAAGATGAGCTGGAAGAGCATTCAGACGATGAAGGGGGGAAGATTAATGCAGGCATCAACAGCAACCATAACAATGTCCAATCTGAAATTCTGAACAATGATGGATCAGGAGTTAACATTGGGTCTAAAACTGAAAATGAAGAAGCTCAAAACGGGATTCATATGGGAGAAGCAGGCAATGGCAGTGCCTGCAGGCTCCCTAAGCAAAACCATGAAACTGATCAAATCAACAATGACAAAGCACAGCAGATGGAGCCCCAAGTGGAAGTGGCTCAGATAGAAGGCAATGAGTTCTTCGTTAAGGTGTTTTGTGAGCACAAGGCTGGCGGGTTTGCGAGGCTGATGGAGGCTCTGAGCTCTCTAGGCTTGGAAGTGACAAATGCAAATGTAACAAGCTGCAAAGGCCTGGTTTCTAATGTGTTCAAAGTAGAGAAGAGGGACAGTGAGATGGTTCAAGCTGACCATGTCAGGGACTCCTTGCTCGAGTTGACAAAAAGCCCATCTGAAAAATGGTCTGATCAGATGGCTTACCCTTTGGAAAATGGCGGAGGCTTGGACTTTCACCACCACCACTACCACCTTCACAGCCATCTTCTCAGTTCTCACCACCTCCACCACCATCAGAATTAG 1839 0.4432 MVNMVQSLKERLRPLVGLKSWDYCVLWKLSEDQRFLDWMDCCCAGSENSTQNGEEEILFPVSSVLPCRDAMLQHPRTKSCDLLAQLPSSISLDSGIHGQTLISNQPRWLNFCNSSDSSVLEETVGTRLLIPVLGGLIELFVANQVAEDQHVVNFVTTQCNIILMEQEAMMNSSNIDTIFSVNANAGNADEEKDPNNHFQATISPVTALENLNDLPFDISVERIRLCSSPMNFLQQFSYTSESSVKNDIFFEGSDGSFLSEKVINPFMSSDCGFQEMEAMQKSMMVCTNNSKNMHREMMEPLANKEQLGDDKDSSTKQMANQADSVSDCSDQIDDDDDLKYRRRTGKGTQSKNLVAERRRRKKLNDRLYALRALVPKISKLDRASILGDAIEFVKELQKQAKDLQDELEEHSDDEGGKINAGINSNHNNVQSEILNNDGSGVNIGSKTENEEAQNGIHMGEAGNGSACRLPKQNHETDQINNDKAQQMEPQVEVAQIEGNEFFVKVFCEHKAGGFARLMEALSSLGLEVTNANVTSCKGLVSNVFKVEKRDSEMVQADHVRDSLLELTKSPSEKWSDQMAYPLENGGGLDFHHHHYHLHSHLLSSHHLHHHQN* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0807 612 MobiDBLite consensus disorder prediction 304 358 - -
Vvi1g0807 612 Coils Coil 386 413 - -
Vvi1g0807 612 Gene3D - 337 412 IPR036638 GO:0046983
Vvi1g0807 612 MobiDBLite consensus disorder prediction 403 422 - -
Vvi1g0807 612 CDD bHLH_AtAMS_like 350 418 - -
Vvi1g0807 612 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 156 IPR025610 -
Vvi1g0807 612 MobiDBLite consensus disorder prediction 313 327 - -
Vvi1g0807 612 Pfam Helix-loop-helix DNA-binding domain 354 397 IPR011598 GO:0046983
Vvi1g0807 612 ProSiteProfiles ACT domain profile. 502 577 IPR002912 -
Vvi1g0807 612 SMART finulus 353 402 IPR011598 GO:0046983
Vvi1g0807 612 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 144 566 - -
Vvi1g0807 612 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 410 IPR036638 GO:0046983
Vvi1g0807 612 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Vvi1g0807 612 CDD ACT_UUR-ACR-like 503 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0807 Vvi-Chr1 8215666 8218166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0807 5 579 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 48.193 3.03e-157 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g0807 bHLH-MYC_N 2.5e-23 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0807 - - vvi:100251619 1163.29