Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0797 ATGGAAGCTGTTCTCAACTCCACAACCACATACCTACCCACACCTCGTCACCTCTCCTCAACCCACTCATATCCACTCCCTTTTTCTCTCTCTTTCCGGGAAAGTAGGAGAAAATTCTCTCCCAAACAGGCCTCCGTCTTGAGAGTCTTCGCTAGCTCCCAAGCTGCCCCTGCCTCATCTGCTGCTGTGACAATACCATCTCAAATGAAGGCTTGGGTTTATGGAGACTATGGAGGAGTTGATGTTTTGAAATTTGATACAGCTGTTTCGGTGCCTCCAGTGAAGGAGGACCAGGTTCTGATCAAGGTTGTTGCTGCAGCGCTTAACCCTGTTGATGCCAAGAGGAGGCAGGGGAAATTCAAGGCCACTGATTCTCCTCTTCCGACTGTTCCTGGATATGATGTGGCTGGGGTGGTGGTAAAGGTTGGAAGCCAAGTAAAGGAACTGAAGGAAGGGGATGAAGTATATGGAGACATAAACGAGAAAGCATTGGATGGGCCTAAGCAGTTTGGCTCGTTTGCAGAATACACTGCTGTTGAAGAGAAACTGTTGGCTCTGAAACCAAAGAATCTGGATTTTGTTCAAGCTGCTGGACTTCCTCTTGCAATTGAGACAGCCTATGAGGGTCTCGAAAGGACTGGATTTTCTGCTGGTAAATCTATTCTTGTTTTGGGTGGGGCTGGTGGAGTTGGAAGCCTTGTCATCCAGCTTGCGAAACAAGTGTTCGGTGCCTCAAGAGTTGCCGCTACATCAAGCACAGCGAAACTGGAGCTCTTGAAGAGCTTGGGAGCTGATTTGACGATTGACTACACTAAGGAGAACTTTGAAGATTTGGCAGAGAAATTCGATGTAGTTTATGATGCAGTTGGGCAGTGTGATAAGGCAGTGAAGGTAGTGAAAGAAGGAGGCAGCGTGGTGGCATTAACAGGTGCCGTGACGCCTCCTGGTTTCAGATTTGTAGTAACTTCAAACGGAGAGGTGTTGAAGAAACTGAACCCATATTTGGAGAGCGGGAAGGTGAAGCCAGTGGTTGATCCCAAGGGACCATTTCCATTTTCTCAGGTTGTTGAAGCTTTCTCCTACGTTGAAACAAGCCGAGCCACTGGAAAGATAGTTATACATCCGATTCCATGA 1134 0.4771 MEAVLNSTTTYLPTPRHLSSTHSYPLPFSLSFRESRRKFSPKQASVLRVFASSQAAPASSAAVTIPSQMKAWVYGDYGGVDVLKFDTAVSVPPVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGDINEKALDGPKQFGSFAEYTAVEEKLLALKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLGGAGGVGSLVIQLAKQVFGASRVAATSSTAKLELLKSLGADLTIDYTKENFEDLAEKFDVVYDAVGQCDKAVKVVKEGGSVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPVVDPKGPFPFSQVVEAFSYVETSRATGKIVIHPIP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0797 377 CDD MDR_like_2 69 373 - -
Vvi1g0797 377 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 61 377 IPR044626 GO:0016628
Vvi1g0797 377 Pfam Alcohol dehydrogenase GroES-like domain 97 159 IPR013154 -
Vvi1g0797 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 191 344 IPR036291 -
Vvi1g0797 377 Gene3D - 77 373 - -
Vvi1g0797 377 Gene3D - 210 324 - -
Vvi1g0797 377 Pfam Zinc-binding dehydrogenase 262 373 - -
Vvi1g0797 377 ProSiteProfiles Pterin-binding domain profile. 259 377 IPR000489 GO:0042558
Vvi1g0797 377 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 218 239 IPR002364 GO:0008270|GO:0016491
Vvi1g0797 377 SMART PKS_ER_names_mod 78 373 IPR020843 GO:0016491
Vvi1g0797 377 SUPERFAMILY GroES-like 65 225 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0797 Vvi-Chr1 8084002 8085978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0797 97 320 Monolignol Biosynthesis Gene Families AT3G19450 26.459 2.30e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0797 K18980 - vvi:100852555 695.271