Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0796 ATGAAAGGAGAGGATAACTATAAGAAGGGGCTATGGACAAAGGAGGAGGATAGGATCCTACTGGATTATATACAGGTACACGGTAGAGGGCGGTGGAACCGTATTTCTAAGATAACAGGTTTGAAGAGGTATGGGAAGAGCTGCAGATTAAGGTGGATGAATTATCTGAGCCCCAGTGTAAAACACGGCGAGTTTACAGAGCAAGAGGAAGACCTCATCATTAGACTCCATAATCTCCTTGGAAACAGGTGGTCTTTGATTGCTGGAAGGGTTCCTGGGCGAACAGACAACCAAGTGAAGAACCATTGGAACTCTCATTTGTGCAAGAGGCTCGGCATCAAGAAGAAGAATAGAAAAACAGCCGTCACCTCCTTAAAGCCACATTCTACAAATGTGGATAACACTCCCAAACGCCAAGCCCTAGTGGACTCCATTTCTAAGCCTTTTCACGATAATAATATGGATGTGGGTGGAGTTACAAGGAGGCAATGCCCTCTGAGCGGCGCCCAGGTTTCCGAGGAGCAACCAGCGGAGGTGGGCTGGCATTGCGTTGACTCCCTCTGGGCCTCCACTGCTGAGCATTTAAGGGTGTGTACCCCAACTTCAATAGAATTTCTTGAGGGGTATTACTCACCTGGCGATGCATTTTGGCAAGGCTTGTGA 663 0.4781 MKGEDNYKKGLWTKEEDRILLDYIQVHGRGRWNRISKITGLKRYGKSCRLRWMNYLSPSVKHGEFTEQEEDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNSHLCKRLGIKKKNRKTAVTSLKPHSTNVDNTPKRQALVDSISKPFHDNNMDVGGVTRRQCPLSGAQVSEEQPAEVGWHCVDSLWASTAEHLRVCTPTSIEFLEGYYSPGDAFWQGL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0796 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Vvi1g0796 220 Gene3D - 2 62 - -
Vvi1g0796 220 CDD SANT 64 107 IPR001005 -
Vvi1g0796 220 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Vvi1g0796 220 FunFam MYB-related transcription factor 8 61 - -
Vvi1g0796 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vvi1g0796 220 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vvi1g0796 220 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Vvi1g0796 220 CDD SANT 12 56 IPR001005 -
Vvi1g0796 220 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vvi1g0796 220 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi1g0796 220 Gene3D - 63 139 - -
Vvi1g0796 220 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 136 - -
Vvi1g0796 220 FunFam Transcription factor WER 63 134 - -
Vvi1g0796 220 SMART sant 8 58 IPR001005 -
Vvi1g0796 220 SMART sant 61 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0796 Vvi-Chr1 8079833 8080711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0796 4 113 MYB Transcription Factor Family AT5G40330 77.273 2.84e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi1g0796 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0796 K09422 - vvi:100852592 468.388