Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0792 ATGGAATATTTATCAAACAAGAAATTTCCCATCAATTCAAAAGATTACAAGTTATATGAGGAAGTTGGTGAAGGTGTTAGTGCCACAGTGTACAGAGCTCTCTGCATTCCATTTAATGAGATAGTCGCTGTCAAGGTTATGGATCTGGAGAGGTGCAACGATAACTTGGATGGTATTCGACATGAAGTACAAACTATGAGCCTGATTGATCATCCAAATGTACTCAGGGCACATTGCTCTTTCTCAGTGGGAAGCTGCCTCTGGATTGTGATGCCTTATATGGCTAGTGGATCTTGTCTTCACATAATGAAATCTTCTTATCCAGAGGGTTTTGAACAGGCTGTTATTGCAACACTATTACGTGAAGTTCTTAAAGCTCTTGTTTATCTTCATTCCAATGGACACATCCACAGAGATGTTAAGGCTGGGAATATCTTGGTTGATTCCAAAGGTGCAATTAAGTTGGCTGACTTTGGAGTTTCGGCATGTATGTTTGATGCTGGAGATAGACAACGTTCAAGGAACACATTTGTGGGAACTCCATGCTGGATGGCTCCTGAAGTTATGCAGCAATTAAATGGATATGACTTTAAAGCAGACATCTGGTCTTTTGGAATAACCGCTCTGGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCAATGAAGGTGTTGCTGATGACATTACAAAATGCACCACCTGGTCTTGACTATGAAAGGGATCGAAGATTTTCAAAGTCGTTTAAAGAGATGGTAGGTGCTTGCTTAGTGAAGGATCCAAAGAAGCGTCCCACATCAGAGAAGCTTTTAAAGCACCGTTTCTTTAAACATGCATGCTCAAAAGAGTTTTTGGCCTGGGCTATTCTTAATGGCCTTGCTCCACTCGGTGACCGGTTTAGGATGCTGAAGGTGTAA 921 0.4159 MEYLSNKKFPINSKDYKLYEEVGEGVSATVYRALCIPFNEIVAVKVMDLERCNDNLDGIRHEVQTMSLIDHPNVLRAHCSFSVGSCLWIVMPYMASGSCLHIMKSSYPEGFEQAVIATLLREVLKALVYLHSNGHIHRDVKAGNILVDSKGAIKLADFGVSACMFDAGDRQRSRNTFVGTPCWMAPEVMQQLNGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRRFSKSFKEMVGACLVKDPKKRPTSEKLLKHRFFKHACSKEFLAWAILNGLAPLGDRFRMLKV* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0792 306 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Vvi1g0792 306 Gene3D Transferase(Phosphotransferase) domain 1 97 288 - -
Vvi1g0792 306 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0792 306 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Vvi1g0792 306 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0792 306 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 306 - -
Vvi1g0792 306 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 305 IPR047173 GO:0043539
Vvi1g0792 306 PIRSF ILK 3 288 - -
Vvi1g0792 306 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Vvi1g0792 306 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0792 306 SUPERFAMILY Protein kinase-like (PK-like) 14 284 IPR011009 -
Vvi1g0792 306 CDD STKc_OSR1_SPAK 14 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0792 Vvi-Chr1 8017580 8021117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0792 1 305 MAP Kinase Kinase Kinase Kinase AT5G14720 82.295 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vvi1g0792 Pkinase 7.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0792 K08835 - vvi:100853867 630.172