LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0790	ATGTCGGACTCGGCGGAGTCGCCAGGTTCTTTACCTGAGTCTCCTCCGGAGGACTCCTCGTCTCCTCCACCAAAATCATCAACCTCACCACCTCCTCCACCTGATGATGATTCTCCTTCGGCACCTCCACCTACATCCAAAACTTCACCCCCTCCACCCTCCGATTCATCCCCACCACCTGATTCAAACACATCACCGCCCTCACCACCCCCTCCCAAATCCGAGTCACCGCCTCCTACTCCGCCACCACCTTCACCTTCACCTCCACCTCCACCTCCACCTCCACCGTCCTCCGGTTCAGGCCCTCCCAAACCTCCACCACCATCACATTCAAACTCTTCACCCCCACCACCACCAACATCGCCACCACCTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCACTTCACATGTCCCCCCTCCTCCACCATCAGATCGGGTTCCAAGTTCATCCACTCCTTCCCCAACATCCAGTCCAGAGAAATCTAGCCAATCATCGGGATCGGGATCGGGATCAAGTACGAGTTCTCAGACTGGCCCTGTTGTCGGTGTGACAGTAGCTGGAGTGGTCATCCTTGCACTGGTTGCCATCTTTTTTGTGGTCTCTCGACGGAAGAAGAAGCATTCAGGGGTCATTCCAGCAAAATACAATCCACCAACTGCAAGCTACTCTGTGAAATCAAATGGGCATTACTATGGACAGCAACCTATGGGGATGTCAGCTCCTTATGGTTCACAACACTCACTTTCTCAACATGGAAATGGAAACAACTATGGGAGTCAAAGAGGGCAAATGTACTACCCTGGGGGACCAGAATCAGGTGTCATAGGCGGTGCTAAGTCCTTTTTCACCTATGAAGAGTTGATGGAAATAACCAATGGATTTTCTCGTCAAAATATCATTGGTGAGGGTGGGTTTGGATATGTTTACAAAGGTTGGCTGCCAGATGGGAGAGTGGTGGCCGTTAAGCAGCTCAAGGCAGGCAGTGGACAGGGCGAACGGGAGTTCAGAGCTGAAGTTGAGATTATTAGTCGTGTTCATCATCGGCATTTGGTCTCTTTGGTGGGATATTCTATAGCTGAGAATCAAAGATTACTCCTCTATGAATTCCTTCCAAACAAGACTCTTGAACATCATTTGCATGGTAAAGAGTTGCCTGTATTGGACTGGACCAAAAGACTCAAGATTGCCATAGGATCTGCTCGTGGTTTGGCATATCTACATGAAGACTGTAATCCAAAAATTATTCATAGGGACATCAAGTCAGCAAACATTCTGTTGGATGATGATTTTGAAGCGCAGGTTGCAGACTTTGGGCTTGCCAAACCATCAAATGACAATAATACCCATGTATCAACTCGAGTCATGGGAACTTTTGGGTACATGGCACCAGAGTATGCATCAAGTGGGAAATTGACTGATAGATCTGATGTATTCTCATTCGGGGTGGTACTTTTAGAGCTTATAACAGGGCGTAAACCTGTTGATCCAACTCAACCTTTGGGAGATGAGAGTTTGGTTGAATGGGCTCGCCCGCTCCTCATTCATGCTCTTGAAACTGGTGATGTCAGTGAATTAATAGATCCAAGGCTGGAACACAGGTACGTGGAGAGCGAGATGCTTAGAATGATTGAGACAGCTGCTGCCTGTGTTCGTCATTCTGCTCCAAAGCGGCCCCGCATGGCAAAGGTGGTAAGAGCATTAGACAGTGAAGGCGAATCGACTGATCTCACCAATGGAGTGAAATATGGTCAGAGCACCATTTATGATTCTGGGCAGTACAATCAGGACATTCAAAGATTTAGGAGGATGGCACTTGGTGATGACAGCTCAGAATATGACATGTACAGTGGGGAATACCAATCGAAAGAAGTGTCTCTTGGAGCCCCAACTTCAAGTACCTTAACTGAGTCAGAAACCCAAGCCATGAATGGCAAATAG	2019	0.4596	MSDSAESPGSLPESPPEDSSSPPPKSSTSPPPPPDDDSPSAPPPTSKTSPPPPSDSSPPPDSNTSPPSPPPPKSESPPPTPPPPSPSPPPPPPPPPSSGSGPPKPPPPSHSNSSPPPPPTSPPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSHVPPPPPSDRVPSSSTPSPTSSPEKSSQSSGSGSGSSTSSQTGPVVGVTVAGVVILALVAIFFVVSRRKKKHSGVIPAKYNPPTASYSVKSNGHYYGQQPMGMSAPYGSQHSLSQHGNGNNYGSQRGQMYYPGGPESGVIGGAKSFFTYEELMEITNGFSRQNIIGEGGFGYVYKGWLPDGRVVAVKQLKAGSGQGEREFRAEVEIISRVHHRHLVSLVGYSIAENQRLLLYEFLPNKTLEHHLHGKELPVLDWTKRLKIAIGSARGLAYLHEDCNPKIIHRDIKSANILLDDDFEAQVADFGLAKPSNDNNTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLIHALETGDVSELIDPRLEHRYVESEMLRMIETAAACVRHSAPKRPRMAKVVRALDSEGESTDLTNGVKYGQSTIYDSGQYNQDIQRFRRMALGDDSSEYDMYSGEYQSKEVSLGAPTSSTLTESETQAMNGK*	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0790	672	MobiDBLite	consensus disorder prediction	176	206	-	-
	Vvi1g0790	672	MobiDBLite	consensus disorder prediction	1	206	-	-
	Vvi1g0790	672	MobiDBLite	consensus disorder prediction	637	672	-	-
	Vvi1g0790	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	441	453	IPR008271	GO:0004672\|GO:0006468
	Vvi1g0790	672	MobiDBLite	consensus disorder prediction	262	290	-	-
	Vvi1g0790	672	MobiDBLite	consensus disorder prediction	650	672	-	-
	Vvi1g0790	672	Gene3D	Transferase(Phosphotransferase) domain 1	397	612	-	-
	Vvi1g0790	672	SUPERFAMILY	Protein kinase-like (PK-like)	304	594	IPR011009	-
	Vvi1g0790	672	FunFam	Proline-rich receptor-like protein kinase PERK8	296	396	-	-
	Vvi1g0790	672	ProSitePatterns	Protein kinases ATP-binding region signature.	327	349	IPR017441	GO:0005524
	Vvi1g0790	672	SMART	serkin_6	321	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0790	672	MobiDBLite	consensus disorder prediction	15	125	-	-
	Vvi1g0790	672	ProSiteProfiles	Protein kinase domain profile.	321	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0790	672	FunFam	proline-rich receptor-like protein kinase PERK8	397	609	-	-
	Vvi1g0790	672	MobiDBLite	consensus disorder prediction	262	289	-	-
	Vvi1g0790	672	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	215	639	IPR047117	-
	Vvi1g0790	672	CDD	STKc_IRAK	327	595	-	-
	Vvi1g0790	672	Pfam	Protein tyrosine and serine/threonine kinase	324	594	IPR001245	GO:0004672\|GO:0006468
	Vvi1g0790	672	Gene3D	Phosphorylase Kinase; domain 1	298	396	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0790	Vvi-Chr1	8004150	8007646	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0790	160	667	Trihelix Transcription Factor Family	AT1G70460	61.850	0.0	640

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Vvi1g0790		PK_Tyr_Ser-Thr	1.9e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g0790	-		-	vvi:100853911	927.546