Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0788 ATGGACAGGGCTTCAATTCTTGGAGATGCGATCCAGTATATTGTGGAGTTGCAGCAGGAGGTGAAGAAACTCCAGGATGAGGTCAATATGGAACAAGAGGACTGCAATATGAAGGATGCTGAATTGAAAAGAAGCTCTAGATACTCACCAGCTACTACTGAACACAACCGAGGCAGCTCTAGTATCCGCGAAAAGAAACAAATAGAATCACAAAGAGTGCAAGTAGAAGTGAAGCTGATTGGCACAAGAGAATTTTTGCTGAAGTTGTTATGTGAGCAGAAGCGAGGTGGGTTTGCAAGGCTGATGGAGGCTATCAACGTTTTAGGGCTTCAAGTTGTTGATGCCAACATCACCACATTTAATGGCAACGTCTTGAACATTTTCAGGGTTGAGGCTAGAGAAATCAGAATGTACATAGAAATACATTGGGATGAGAAGAAAAAGAGAGCAAGTTGTGATTCAGAAAATGAAGCATTTACTCTCAGCATTGAGAGCTCTCCTGTTCATGTATCTTCACTTCATCTTGTATGA 531 0.4181 MDRASILGDAIQYIVELQQEVKKLQDEVNMEQEDCNMKDAELKRSSRYSPATTEHNRGSSSIREKKQIESQRVQVEVKLIGTREFLLKLLCEQKRGGFARLMEAINVLGLQVVDANITTFNGNVLNIFRVEAREIRMYIEIHWDEKKKRASCDSENEAFTLSIESSPVHVSSLHLV* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0788 176 Gene3D - 1 42 IPR036638 GO:0046983
Vvi1g0788 176 MobiDBLite consensus disorder prediction 35 50 - -
Vvi1g0788 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 35 IPR036638 GO:0046983
Vvi1g0788 176 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 134 - -
Vvi1g0788 176 MobiDBLite consensus disorder prediction 35 65 - -
Vvi1g0788 176 Coils Coil 7 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0788 Vvi-Chr1 7989003 7990025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0788 1 137 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 39.735 2.46e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0788 - - vvi:100853983 321.242