Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0758 ATGTCAACACTGAACCATCTCTTTGATCTTCAAGAACAGATTTGCTATGTACAATGCGGTTTCTGCACCACCATCTTGCTGGTCAGTGTCCCATATAGCAGCTTGTCAATGGTGGTTACAGTCCGATGTGGACATTGCGCAAGCCTCCTCTCTGTAAACATGATGAAAGCCTCATTTGTTCCTCTACATCTCTTAGCTTCTCTTAGCCAGGATGAGCCAAAAGAAGGTTGTCCTAATGAAGAGGGAGCTCAAAAAGCCTCAGACAAGCGAAGTCCATCCATGGTGGCCTCTTCTGACAATGAAGAAGATGATATAGTTCCTGTCCACCATGTCGTTAATAAACCTCCAGAGAAGAGACAGCGAGCTCCATCAGCTTATAACCGCTTCATCAAAGAAGAGATCAGAAGGCTTAAGGCTGAAAACCCCAAGATGACTCACAAGGAAGCCTTCAGTACAGCTGCAAAAAATTGGGCCCACTTCCCAGCAATTCAATTGAAAGGAGCTGGAGAGAGCTGTAGCCAGGAAAGGTAG 531 0.4576 MSTLNHLFDLQEQICYVQCGFCTTILLVSVPYSSLSMVVTVRCGHCASLLSVNMMKASFVPLHLLASLSQDEPKEGCPNEEGAQKASDKRSPSMVASSDNEEDDIVPVHHVVNKPPEKRQRAPSAYNRFIKEEIRRLKAENPKMTHKEAFSTAAKNWAHFPAIQLKGAGESCSQER* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0758 176 CDD HMG-box_SF 121 157 - -
Vvi1g0758 176 Pfam YABBY protein 10 165 IPR006780 GO:0007275
Vvi1g0758 176 FunFam Axial regulator YABBY 4 108 175 - -
Vvi1g0758 176 MobiDBLite consensus disorder prediction 71 123 - -
Vvi1g0758 176 SUPERFAMILY HMG-box 111 161 IPR036910 -
Vvi1g0758 176 Gene3D High mobility group box domain 112 170 IPR036910 -
Vvi1g0758 176 MobiDBLite consensus disorder prediction 102 117 - -
Vvi1g0758 176 PANTHER PROTEIN YABBY 6-RELATED 1 168 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0758 Vvi-Chr1 7691531 7692677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0758 2 172 C2C2-YABBY Transcription Factor Family AT1G23420 64.641 2.31e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vvi1g0758 YABBY 8.1e-65 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0758 K25796 - vvi:100258462 353.984