Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0748 ATGGAAAGCAGGGGCTATGTGTTGTGGGGAGTCGGATTACTGCTTTTGACATTGATGGAGGGTTCTTCTGCTACTCTTTCTCCTTCTGGTATCAACTATGAAGTTGTAGCTTTGATGACTATAAAAAATAATCTGAATGACCCATATAATGTTTTGGAGAACTGGGATATTAATTCAGTGGATCCTTGTAGCTGGAGGATGGTTACTTGCTCTTCCGACGGCTATGTTTCTGCTCTGGGGCTGCCCAGTCAAAGTTTGTCTGGAACCTTATCTCCATGGATTGGGAACCTCACCAACTTGCAATCTGTGTTGCTGCAGAATAATGCCATTTCTGGTCCTATTCCTGATTCAATTGGGAAGTTGGAAAAGCTTGAGACACTTGATCTCTCCCACAATAAATTTGATGGTGGAATACCCAGTTCTTTGGGGGGACTTAAGAAACTGAATTATTTGCGACTAAACAACAACAGCCTTACTGGACCATGCCCTGAGTCTCTTTCCCAGGTTGAAGGCCTCTCCCTCGTTGACCTTTCTTTTAATAATCTGAGTGGTTCCATGCCAAAAATATCTGCAAGAACCTTCAAAATTATTGGTAACCCTTCACTTTGTGGTGCCAATGCCACAAACAACTGTTCTGCAATCTCTCCAGAGCCACTTTCTTTTCCTCCAGATGCTCTAAGAGCTCATTCAGATTCTGGATCTAAGAGCCACCGTGTGGCTATTGCGTTTGGTGCAAGTTTTGGTGCTGCTCTTTTAATCATAATTATTGTTGGGCTGTCAGTTTGGTGGCGATATAGGAGGAACCAACAAATTTTCTTTGATGTTAATGATCAATATGACCCAGAGGTACGCTTGGGCCATCTGAGGAGGTATACATTTAAGGAACTTAGGGCTGCAACAGATCATTTCAACCCAAAGAATATTTTAGGAAGGGGTGGATTTGGAATTGTATACAAGGGTTGCTTAAATGATAGAACTCTGGTGGCTGTTAAAAGGCTGAAAGACTATAATGCCGTAGGTGGTGAAATCCAATTTCAAACAGAAGTTGAGATGATAAGTTTGGCTGTCCATCGGAATCTTCTCCGGCTTTGTGGATTCTGTACAACAGAGAGCGAGCGGCTCCTTGTTTACCCCTATATGCCTAATGGGAGTGTAGCATCTCGATTAAGAGATCAAATCCATGGCAGGCCAGCGTTAGACTGGTCAAGGCGAAAGAGGATAGCTTTAGGCACAGCAAGGGGGCTACTTTATTTGCATGAGCAGTGTGACCCCAAAATTATCCACCGTGATGTCAAGGCAGCCAACATTTTGCTGGATGAAGACTTTGAAGCAGTTGTTGGAGATTTCGGGTTGGCAAAACTGTTGGATCATAGAGAGTCACATGTGACCACAGCAGTGCGGGGCACTGTTGGCCACATTGCTCCTGAATACTTGTCAACAGGTCAGTCATCAGAAAAGACAGATGTGTTTGGGTTTGGAATCTTGCTCCTTGAACTAATCACAGGTCAGAAGGCTTTGGATTTTGGACGGGCGGCAAACCAGAAAGGAGTAATGCTTGATTGGGTAAAGAAGCTCCATCAAGAGGGAAAGCTCAACCTGATGGTGGATAAAGATTTAAAGAACAATTTTGACAGGGTTGAATTAGAAGAAATGGTTAAAGTTGCCCTTTTATGCACTCAATTTAATCCTTCTCACCGCCCAAAAATGTCGGAAATATTGAGGATGTTGGAAGGTGATGGTTTAGCAGAGAAATGGGAGGCCTCGCAGAAGGTTGAGACTCCAAGGTTCAGGTCATGTGAAAATCCTCCCCAAAGATATTCAGATTACATAGAAGAATCCTCCCTGGTGATTGAAGCAATGGAGCTTTCAGGTCCCAGGTGA 1881 0.4365 MESRGYVLWGVGLLLLTLMEGSSATLSPSGINYEVVALMTIKNNLNDPYNVLENWDINSVDPCSWRMVTCSSDGYVSALGLPSQSLSGTLSPWIGNLTNLQSVLLQNNAISGPIPDSIGKLEKLETLDLSHNKFDGGIPSSLGGLKKLNYLRLNNNSLTGPCPESLSQVEGLSLVDLSFNNLSGSMPKISARTFKIIGNPSLCGANATNNCSAISPEPLSFPPDALRAHSDSGSKSHRVAIAFGASFGAALLIIIIVGLSVWWRYRRNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNPKNILGRGGFGIVYKGCLNDRTLVAVKRLKDYNAVGGEIQFQTEVEMISLAVHRNLLRLCGFCTTESERLLVYPYMPNGSVASRLRDQIHGRPALDWSRRKRIALGTARGLLYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRESHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRAANQKGVMLDWVKKLHQEGKLNLMVDKDLKNNFDRVELEEMVKVALLCTQFNPSHRPKMSEILRMLEGDGLAEKWEASQKVETPRFRSCENPPQRYSDYIEESSLVIEAMELSGPR* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0748 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 587 - -
Vvi1g0748 626 Gene3D Transferase(Phosphotransferase) domain 1 380 596 - -
Vvi1g0748 626 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Vvi1g0748 626 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Vvi1g0748 626 ProSiteProfiles Protein kinase domain profile. 303 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0748 626 SUPERFAMILY L domain-like 32 193 - -
Vvi1g0748 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Vvi1g0748 626 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Vvi1g0748 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Vvi1g0748 626 FunFam Somatic embryogenesis receptor-like kinase 1 380 596 - -
Vvi1g0748 626 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vvi1g0748 626 Pfam Protein kinase domain 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0748 626 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Vvi1g0748 626 SUPERFAMILY Protein kinase-like (PK-like) 279 577 IPR011009 -
Vvi1g0748 626 SMART serkin_6 303 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0748 Vvi-Chr1 7582677 7588839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0748 67 626 Receptor kinase-like Gene Family AT1G60800 75.482 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vvi1g0748 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0748 - - vvi:100256748 1217.6