Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0746 ATGGAGGAAGTGTACGGTCTCAATTCGACGTCCGACTACTCCGACAAGGTGCTGATGTCGCCGGAGAATCTGATACTGCCGGCGGATTACCAGAGCTTCTTCTCCTCCGCAGCCGCCTTTCGTGACTATCGGATTCCCGTGTTTGGATCGAACGAGCTAATTTCGGTGGCTTCTGCTATATCAGAGACTGCTTCGATCACGCCCGAAATTCAACGAGAAGAAGATGTGTCTTCTGTGATCAAAGCCAAAATCGCTTCCCATCCTTGCTACCCGAGATTGCTCGAAGCTTACATCGATTGTCAGAAGGTAGGGGCGCCTCCGGAAATTGCGTGTCTGTTAGACGAAATCCGGCGAGAAAACGACGTTTGTAAGAGAGACGCTGTTTCAACGTGCTTAGGAGCCGATCCTGAGCTCGACGAGTTCATGGAAACATACTGTGATATGTTGGAGAAGTATAAATCAGATCTCGCAAGGCCTTTTGATGAAGCTACGACCTTCTTGAACAAGATTGAAATGCAGCTGGGCAATCTCTGCAACGATGCATCCATACGAAGCCTTCCCGATGAAGCTGTTGTGTCATCTGATGAGGATTTTAGTGGAGGAGAGGAGGTACAAGAGGCTCAACCAAGGGGTGAAGACCAAGAACTTAAGGAGAGGCTCTTACGGAGGTTTGGTGGTCGAATAAGTTCCCTCAAGCTGGAGTTTTCAAAAAAGAAGAAAAAAGGAAAGCTGCCAAAAGAAGCAAGGCAAACACTACTTGAGTGGTGGAACCTTCATTATAAATGGCCATACCCAACGGAAGCTGATAAAATTGCACTTGCTGAAACAACGGGTCTGGACCAGAAGCAAATTAACAATTGGTTTATAAATCAACGAAAGCGGCACTGGAAACCATCAGAGAACATGCAATTTGCTGTTATGGATAACCATTCAGGACAATTCTTTACAGATGACTGA 957 0.466 MEEVYGLNSTSDYSDKVLMSPENLILPADYQSFFSSAAAFRDYRIPVFGSNELISVASAISETASITPEIQREEDVSSVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIACLLDEIRRENDVCKRDAVSTCLGADPELDEFMETYCDMLEKYKSDLARPFDEATTFLNKIEMQLGNLCNDASIRSLPDEAVVSSDEDFSGGEEVQEAQPRGEDQELKERLLRRFGGRISSLKLEFSKKKKKGKLPKEARQTLLEWWNLHYKWPYPTEADKIALAETTGLDQKQINNWFINQRKRHWKPSENMQFAVMDNHSGQFFTDD* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0746 318 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Vvi1g0746 318 CDD homeodomain 247 299 IPR001356 GO:0003677
Vvi1g0746 318 FunFam Homeobox protein knotted-1-like 2 240 302 - -
Vvi1g0746 318 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Vvi1g0746 318 MobiDBLite consensus disorder prediction 193 214 - -
Vvi1g0746 318 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Vvi1g0746 318 SMART HOX_1 237 302 IPR001356 GO:0003677
Vvi1g0746 318 Pfam ELK domain 215 236 IPR005539 GO:0003677
Vvi1g0746 318 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Vvi1g0746 318 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Vvi1g0746 318 Gene3D - 233 307 - -
Vvi1g0746 318 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Vvi1g0746 318 SMART ELK_2 215 236 IPR005539 GO:0003677
Vvi1g0746 318 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
Vvi1g0746 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 305 - -
Vvi1g0746 318 SUPERFAMILY Homeodomain-like 236 311 IPR009057 -
Vvi1g0746 318 Pfam KNOX1 domain 80 121 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0746 Vvi-Chr1 7552415 7562329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0746 1 318 Homeobox Transcription Factor Family AT1G23380 68.278 4.60e-151 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vvi1g0746 KNOX2 8.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0746 - - vri:117903949 626.32