Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0741 ATGAAGATGAAGCAAGCCCACCCATCAGCCCCTTCCCCTTCTCTTCTCTTCCTTTTTATCATAACTCTATCGGTGATAGAACTATCCGCCGGGGACCCCAGATCACGAATGATCCAAATCACGTGTGCGAACCAGCCAGAGCACAATTCAACCATCTTCGTCCCCAATTTTGTGGCAATGATGGAAAATATCAGTAACCAAGTGCGCACTTCTGGTTTTGGCGTGGCTATTTCTGGCTCAGGACCTGATGCTAACTACGGTCTTGCCCAATGCTATGGAGATCTGTCTTTGCTTGATTGTGTATTATGCTATGCGGAGGCGCGAACAGTTCTTCCCCAGTGCTTTCCTTACAATGGGGGTCGCATTTACCTTGATGGTTGCTTTATGCGAGCTCAAAATTACAGCTTCATTGAGGAGTATACAGGGCCAAGTGACCATGCTTTGTGTGGAAACGAAACCCGAAAGAACTCCACGTTCCAGGAGTCTGCAAGGCAGGCTATAAAGCAAGCAGTTGCTGATGCACCAAACAATAATGGGTATGCAAGGAGTAAGGTGATAGTGCCGGGAACAGCAAATGAGTCGGCCTATGTGCTGGCTGATTGTTGGAGGACTTTGAATGCAAGCTCATGTAGGGCATGTCTGGAGAATGCATCGTCATCGATATTGGGATGCTTGCCTTGGTCTGAAGGGCGGGCACTGAACACAGGGTGCTTCATGAGGTACTCAGATACAGATTTCCTCAACAAGGAACCAGATAATGGAAGTTCAAGAGGGACTGTAATAATAATAGTAGTACCTGCTGTAAGTGCTGTGATTGTTCTTCTAGTACTGGGAGCGATTGGAGTTTATATCTGGAAGCAAAGAAAGATCCAAAAGAAAAGGAGAGGTTCCAACGATGCTATAAAATTAGTTAAGACCCTCCATGACAGTAGCTTGAACTTCAAATATGCTACACTTGAGAAGGCCACAGGATCTTTTGATAATGAGAACAAGCTTGGACAAGGAGGATTTGGGACTGTTTATAAGGGAGTTCTGACTGATGGAAGAGAGATTGCTGTGAAGAGGCTTTTCTTCAACAACAGACACAGAGCAGCAGATTTCTATAATGAAGTTAACATAATAAGCAGTGTTGAGCACAAAAATCTAGTCAGGCTGTTGGGGTGCAGTTGCTCAGGGCCTGAAAGCCTTCTCGTCTATGAATATCTGCCAAATAAGAGTCTTGATCGCTTCATCTTCGATACAAACAGAGGTAAAGCACTGAACTGGGAAAAGAGATGTGAGATAATCATTGGGACAGCAGAAGGTCTGGCCTACCTTCATGAAAATTCGACGAACAGAATTATCCACAGAGATATAAAAGCCAGTAATATCTTGTTGGATTCGAAGATGCGTGCTAAAATAGCTGATTTTGGGCTGGCCAGGTCTTTCCAAGAAGATAAGAGTCATATAACCACTGCCATTGCAGGAACACTAGGATATATGGCTCCAGAGTACCTGGCCCATGGCCAGTTAACAGAAAAGGTAGATGTCTACAGCTTTGGTGTGCTCTTGTTAGAGATTGTCACAGGAAGGCAGAACAACAGGAGCAAAACTTCAGAATACTCGGACAGCATAGTCACTATCGCATGGAAGCATTTCCAGCTAGGGACCTTGGAGGAACTTTTTGATCCGAATTTAATGTTGCATAACTACCACAATGGCAACATTAAGAACGAAGTTTTGAGAGTGATGCAGATAGCACTTCTTTGCACCCAAGAGGCTCCATCATTACGACCATCAATGTCAAAGGCACTACAGATGCTGACAAAGAAGGATGAACATCTTCCAACACCCACTAATCCCCCATTTATAGATGAAAGGACCATGGAACTTAATGAGGCATGTGCGAACCCATCTTACCCCCTCAATGCTGCCATTTCTGGTTCAGTTGCCAATATGTCCCACAGTTCTTTCTACCCCAGATGA 1965 0.4463 MKMKQAHPSAPSPSLLFLFIITLSVIELSAGDPRSRMIQITCANQPEHNSTIFVPNFVAMMENISNQVRTSGFGVAISGSGPDANYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAQNYSFIEEYTGPSDHALCGNETRKNSTFQESARQAIKQAVADAPNNNGYARSKVIVPGTANESAYVLADCWRTLNASSCRACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEPDNGSSRGTVIIIVVPAVSAVIVLLVLGAIGVYIWKQRKIQKKRRGSNDAIKLVKTLHDSSLNFKYATLEKATGSFDNENKLGQGGFGTVYKGVLTDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDTNRGKALNWEKRCEIIIGTAEGLAYLHENSTNRIIHRDIKASNILLDSKMRAKIADFGLARSFQEDKSHITTAIAGTLGYMAPEYLAHGQLTEKVDVYSFGVLLLEIVTGRQNNRSKTSEYSDSIVTIAWKHFQLGTLEELFDPNLMLHNYHNGNIKNEVLRVMQIALLCTQEAPSLRPSMSKALQMLTKKDEHLPTPTNPPFIDERTMELNEACANPSYPLNAAISGSVANMSHSSFYPR* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0741 654 SMART serkin_6 326 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0741 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vvi1g0741 654 FunFam Cysteine-rich receptor-like protein kinase 3 145 246 - -
Vvi1g0741 654 FunFam Cysteine-rich receptor-like protein kinase 2 35 136 - -
Vvi1g0741 654 CDD STKc_IRAK 332 603 - -
Vvi1g0741 654 ProSiteProfiles Gnk2-homologous domain profile. 35 136 IPR002902 -
Vvi1g0741 654 Gene3D - 34 136 IPR038408 -
Vvi1g0741 654 Gene3D - 145 246 IPR038408 -
Vvi1g0741 654 ProSiteProfiles Protein kinase domain profile. 326 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0741 654 FunFam Putative DUF26-domain receptor-like protein kinase family protein 294 401 - -
Vvi1g0741 654 SUPERFAMILY Protein kinase-like (PK-like) 310 622 IPR011009 -
Vvi1g0741 654 Gene3D Phosphorylase Kinase; domain 1 286 401 - -
Vvi1g0741 654 Gene3D Transferase(Phosphotransferase) domain 1 402 612 - -
Vvi1g0741 654 Pfam Salt stress response/antifungal 48 134 IPR002902 -
Vvi1g0741 654 Pfam Salt stress response/antifungal 152 243 IPR002902 -
Vvi1g0741 654 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Vvi1g0741 654 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 86 625 - -
Vvi1g0741 654 FunFam Cysteine-rich receptor-like protein kinase 2 402 609 - -
Vvi1g0741 654 Pfam Protein kinase domain 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0741 654 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0741 Vvi-Chr1 7509481 7512514 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0741 13 654 Receptor kinase-like Gene Family AT1G70520 68.323 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi1g0741 Pkinase 7.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0741 - - vvi:100251695 1277.69